Publications

2024

Brunßen, Dominique; Suter, Beat (2024). Effects of unstable β-PheRS on food avoidance, growth, and development are suppressed by the appetite hormone CCHa2. Fly, 18(1) Taylor & Francis 10.1080/19336934.2024.2308737

Otesteanu, Corin F; Caldelari, Reto; Heussler, Volker; Sznitman, Raphael (2024). Machine learning for predicting Plasmodium liver stage development in vitro using microscopy imaging. Computational and structural biotechnology journal, 24, pp. 334-342. Elsevier 10.1016/j.csbj.2024.04.029

Marq, Jean-Baptiste; Gosetto, Margaux; Altenried, Aline; Vadas, Oscar; Maco, Bohumil; Dos Santos Pacheco, Nicolas; Tosetti, Nicolò; Soldati-Favre, Dominique; Lentini, Gaëlle (2024). Cytokinetic abscission in Toxoplasma gondii is governed by protein phosphatase 2A and the daughter cell scaffold complex. The EMBO journal, 43(17), pp. 3752-3786. EMBO Press 10.1038/s44318-024-00171-9

Wirdnam, Corina D; Warmus, Dawid; Faso, Carmen (2024). Nourseothricin as a novel drug for selection of transgenic Giardia lamblia. International journal for parasitology. Drugs and drug resistance, 25(100543), p. 100543. Elsevier 10.1016/j.ijpddr.2024.100543

LeishGEM, Team (2024). LeishGEM: genome-wide deletion mutant fitness and protein localisations in Leishmania. Trends in parasitology, 40(8), pp. 675-678. Elsevier 10.1016/j.pt.2024.06.003

Das, Moushumi; Semple, Jennifer I; Haemmerli, Anja; Volodkina, Valeriia; Scotton, Janik; Gitchev, Todor; Annan, Ahrmad; Campos, Julie; Statzer, Cyril; Dakhovnik, Alexander; Ewald, Collin Y; Mozziconacci, Julien; Meister, Peter (2024). Condensin I folds the Caenorhabditis elegans genome. Nature genetics, 56(8), pp. 1737-1749. Springer Nature 10.1038/s41588-024-01832-5

Maurizio, Marina; Masid, Maria; Woods, Kerry; Caldelari, Reto; Doench, John G; Naguleswaran, Arunasalam; Joly, Denis; González-Fernández, Martín; Zemp, Jonas; Borteele, Mélanie; Hatzimanikatis, Vassily; Heussler, Volker; Rottenberg, Sven; Olias, Philipp (2024). Host cell CRISPR genomics and modelling reveal shared metabolic vulnerabilities in the intracellular development of Plasmodium falciparum and related hemoparasites. Nature Communications, 15(1) Springer Nature 10.1038/s41467-024-50405-x

Wojnacki, José; Quassollo, Gonzalo; Bordenave, Martín D; Unsain, Nicolás; Martínez, Gaby F; Szalai, Alan M; Pertz, Olivier; Gundersen, Gregg G; Bartolini, Francesca; Stefani, Fernando D; Cáceres, Alfredo; Bisbal, Mariano (2024). Dual spatio-temporal regulation of axon growth and microtubule dynamics by RhoA signaling pathways. Journal of cell science, 137(14) Company of Biologists 10.1242/jcs.261970

Bindschedler, Annina; Schmuckli-Maurer, Jacqueline; Buchser, Sophie; Fischer, Tara D; Wacker, Rahel; Davalan, Tim; Brunner, Jessica; Heussler, Volker T (2024). LC3B labeling of the parasitophorous vacuole membrane of Plasmodium berghei liver stage parasites depends on the V-ATPase and ATG16L1. Molecular microbiology, 121(6), pp. 1095-1111. Wiley 10.1111/mmi.15259

Gagliardi, Paolo Armando; Pertz, Olivier (2024). The mitogen-activated protein kinase network, wired to dynamically function at multiple scales. Current opinion in cell biology, 88, p. 102368. Elsevier 10.1016/j.ceb.2024.102368

Nahar, Smita; Morales Moya, Lucas J; Brunner, Jana; Hendriks, Gert-Jan; Towbin, Benjamin; Hauser, Yannick P; Brancati, Giovanna; Gaidatzis, Dimos; Großhans, Helge (2024). Dynamics of miRNA accumulation during C. elegans larval development. Nucleic acids research, 52(9), pp. 5336-5355. Oxford University Press 10.1093/nar/gkae115

Stefanov, Bozhidar-Adrian; Ajuh, Elvis; Allen, Sarah; Nowacki, Mariusz (2024). Eukaryotic release factor 1 from Euplotes promotes frameshifting at premature stop codons in human cells. iScience, 27(4) Elsevier 10.1016/j.isci.2024.109413

Fuchs Wightman, Federico; Lukin, Jerónimo; Giusti, Sebastián A; Soutschek, Michael; Bragado, Laureano; Pozzi, Berta; Pierelli, María L; González, Paula; Fededa, Juan P; Schratt, Gerhard; Fujiwara, Rina; Wilusz, Jeremy E; Refojo, Damián; de la Mata, Manuel (2024). Influence of RNA circularity on Target RNA-Directed MicroRNA Degradation. Nucleic acids research, 52(6), pp. 3358-3374. Oxford University Press 10.1093/nar/gkae094

Dobrzynski, Maciej; Grädel, Benjamin; Gagliardi, Paolo Armando; Pertz, Olivier (2024). Quantification of collective signalling in time-lapse microscopy images. Methods in microscopy, 1(1), pp. 19-30. de Gruyter 10.1515/mim-2024-0003

Liu, Yongqiang; Niu, Junhua; Ye, Fei; Solberg, Therese; Lu, Borong; Wang, Chundi; Nowacki, Mariusz; Gao, Shan (2024). Dynamic DNA N 6-adenine methylation (6mA) governs the encystment process, showcased in the unicellular eukaryote Pseudocohnilembus persalinus. Genome research, 34(2), pp. 256-271. Cold Spring Harbor, N.Y 10.1101/gr.278796.123

Pulfer, Alain; Pizzagalli, Diego Ulisse; Gagliardi, Paolo Armando; Hinderling, Lucien; Lopez, Paul; Zayats, Romaniya; Carrillo-Barberà, Pau; Antonello, Paola; Palomino-Segura, Miguel; Grädel, Benjamin; Nicolai, Mariaclaudia; Giusti, Alessandro; Thelen, Marcus; Gambardella, Luca Maria; Murooka, Thomas T; Pertz, Olivier; Krause, Rolf; Gonzalez, Santiago Fernandez (2024). Transformer-based spatial-temporal detection of apoptotic cell death in live-cell imaging. eLife, 12 eLife Sciences Publications 10.7554/eLife.90502

Beyeler, Raphael; Jordan, Melanie; Dorner, Lilian; He, Buyuan; Cyrklaff, Marek; Roques, Magali; Stanway, Rebecca; Frischknecht, Friedrich; Heussler, Volker (2024). Putative prefoldin complex subunit 5 of Plasmodium berghei is crucial for microtubule formation and parasite development in the mosquito. Molecular microbiology, 121(3), pp. 481-496. Blackwell Science 10.1111/mmi.15196

Zhang, Fukai; Bechara, Sebastian; Nowacki, Mariusz (2024). Structural maintenance of chromosomes (SMC) proteins are required for DNA elimination in Paramecium. Life science alliance, 7(2) EMBO Press 10.26508/lsa.202302281

Yadollahi Farsani, Mahtab; Amini Farsani, Zeinab; Teimuri, Shohreh; Kolahdouzan, Mohsen; Eshraghi Samani, Reza; Teimori, Hossein (2024). Deregulation of miR-1245b-5p and miR-92a-3p and their potential target gene, GATA3, in epithelial-mesenchymal transition pathway in breast cancer. Cancer reports, 7(2), e1955. Wiley 10.1002/cnr2.1955

Jejina, Aleksandra; Ayala, Yeniffer; Beuchle, Dirk; Höhener, Thomas; Dörig, Ruth E; Vazquez-Pianzola, Paula; Hernández, Greco; Suter, Beat (2024). Role of BicDR in bristle shaft construction and support of BicD functions. Journal of cell science, 137(2) Company of Biologists 10.1242/jcs.261408

Ghasempour, Ghasem; Zamani-Garmsiri, Fahimeh; Farhad, Shaikhnia; Soleimani, Ali; Hosseini Fard, Syed Reza; Leila, Janani; Teimuri, Shohreh; Parvaz, Najmeh; Mohammadi, Payam; Najafi, Mohammad (2024). Efficacy and Safety of Alirocumab and Evolocumab as Proprotein Convertase Subtilisin/Kexin Type 9 (PCSK9) Inhibitors in Familial Hypercholesterolemia: A Systematic Review and Meta-Analysis. Current medicinal chemistry, 31(2), pp. 223-241. Bentham 10.2174/0929867330666230228120601

Maurer-Alcalá, Xyrus X; Cote-L'Heureux, Auden; Kosakovsky Pond, Sergei L; Katz, Laura A (2024). Somatic genome architecture and molecular evolution are decoupled in "young" linage-specific gene families in ciliates. PLoS ONE, 19(1) Public Library of Science 10.1371/journal.pone.0291688

Jetishi, Clirim; Balmer, Erina A; Berger, Bianca M; Faso, Carmen; Ochsenreiter, Torsten (2024). Expansion of metabolically labelled endocytic organelles and cytoskeletal cell structures in Giardia lamblia using optimised U-ExM protocols. Microbial cell, 11, pp. 198-206. Shared Science Publishers OG 10.15698/mic2024.06.825

2023

Balmer, Erina A; Wirdnam, Corina D; Faso, Carmen (2023). A core UPS molecular complement implicates unique endocytic compartments at the parasite-host interface in Giardia lamblia. Virulence, 14(1), p. 2174288. Taylor & Francis 10.1080/21505594.2023.2174288

Hernández, Greco; Vazquez-Pianzola, Paula (2023). eIF4E as a molecular wildcard in metazoans RNA metabolism. Biological reviews of the Cambridge Philosophical Society, 98(6), pp. 2284-2306. Wiley 10.1111/brv.13005

Stojanovski, Klement; Gheorghe, Ioana; Lenart, Peter; Lanjuin, Anne; Mair, William B; Towbin, Benjamin D (2023). Maintenance of appropriate size scaling of the C. elegans pharynx by YAP-1. Nature Communications, 14(1), p. 7564. Springer Nature 10.1038/s41467-023-43230-1

Atchou, Kodzo; Berger, Bianca Manuela; Heussler, Volker; Ochsenreiter, Torsten (2023). Pre-gelation staining expansion microscopy (PS-ExM) for visualisation of the Plasmodium liver stage. Journal of cell science, 136(22) Company of Biologists 10.1242/jcs.261377

Amodeo, Simona; Bregy, Irina; Ochsenreiter, Torsten (2023). Mitochondrial genome maintenance - the kinetoplast story. FEMS microbiology reviews, 47(6) Blackwell Publishing Ltd 10.1093/femsre/fuac047

Smith, Joseph T; Tylec, Brianna; Naguleswaran, Arunasalam; Roditi, Isabel; Read, Laurie K (2023). Developmental dynamics of mitochondrial mRNA abundance and editing reveal roles for temperature and the differentiation-repressive kinase RDK1 in cytochrome oxidase subunit II mRNA editing. mBio, 14(5), e0185423. American Society for Microbiology 10.1128/mbio.01854-23

Wehrens, Martijn; Krah, Laurens H J; Towbin, Benjamin D; Hermsen, Rutger; Tans, Sander J (2023). The interplay between metabolic stochasticity and cAMP-CRP regulation in single E. coli cells. Cell reports, 42(10), p. 113284. Cell Press 10.1016/j.celrep.2023.113284

Gagliardi, Paolo Armando; Grädel, Benjamin; Jacques, Marc-Antoine; Hinderling, Lucien; Ender, Pascal; Cohen, Andrew R; Kastberger, Gerald; Pertz, Olivier; Dobrzynski, Maciej (2023). Automatic detection of spatio-temporal signaling patterns in cell collectives. The Journal of cell biology, 222(10) Rockefeller Institute Press 10.1083/jcb.202207048

Malnar Črnigoj, Mirjana; Čerček, Urša; Yin, Xiaoke; Ho, Manh Tin; Repic Lampret, Barbka; Neumann, Manuela; Hermann, Andreas; Rouleau, Guy; Suter, Beat; Mayr, Manuel; Rogelj, Boris (2023). Phenylalanine-tRNA aminoacylation is compromised by ALS/FTD-associated C9orf72 C4G2 repeat RNA. Nature communications, 14(1), p. 5764. 10.1038/s41467-023-41511-3

Smith, Hannah J; Lanjuin, Anne; Sharma, Arpit; Prabhakar, Aditi; Nowak, Ewelina; Stine, Peter G; Sehgal, Rohan; Stojanovski, Klement; Towbin, Benjamin D; Mair, William B (2023). Neuronal mTORC1 inhibition promotes longevity without suppressing anabolic growth and reproduction in C. elegans. PLoS genetics, 19(9), e1010938. Public Library of Science 10.1371/journal.pgen.1010938

Maushe, Dorothy; Ogi, Vera; Divakaran, Keerthi; Verdecia Mogena, Arletys María; Himmighofen, Paul Anton; Machado, Ricardo A R; Towbin, Benjamin Daniel; Ehlers, Ralf-Udo; Molina, Carlos; Parisod, Christian; Robert, Christelle Aurélie Maud (2023). Stress tolerance in entomopathogenic nematodes: Engineering superior nematodes for precision agriculture. Journal of invertebrate pathology, 199, p. 107953. Elsevier 10.1016/j.jip.2023.107953

Amodeo, Simona; Bregy, Irina; Hoffmann, Anneliese; Fradera-Sola, Albert; Kern, Mara; Baudouin, Hélène; Zuber, Benoît; Butter, Falk; Ochsenreiter, Torsten (2023). Characterization of two novel proteins involved in mitochondrial DNA anchoring in Trypanosoma brucei. PLoS pathogens, 19(7), e1011486. Public Library of Science 10.1371/journal.ppat.1011486

Bao, Mengjing; Dörig, Ruth E; Vazquez-Pianzola, Maria Paula; Beuchle, Dirk; Suter, Beat (2023). Differential modification of the C-terminal tails of different α-tubulins and their importance for microtubule function in vivo. eLife, 12 eLife Sciences Publications 10.7554/eLife.87125

Pozzi, Berta; Naguleswaran, Arunasalam; Florini, Francesca; Rezaei, Zahra; Roditi, Isabel (2023). The RNA export factor TbMex67 connects transcription and RNA export in Trypanosoma brucei and sets boundaries for RNA polymerase I. Nucleic acids research, 51(10), pp. 5177-5192. Oxford University Press 10.1093/nar/gkad251

Hoehener, Cristina; Engeroff, Paul (2023). Hinge region modification for the engineering of antibody function. Allergy, 78(6), pp. 1717-1718. Wiley 10.1111/all.15684

Nałęcz-Jawecki, Paweł; Gagliardi, Paolo Armando; Kochańczyk, Marek; Dessauges, Coralie; Pertz, Olivier; Lipniacki, Tomasz (2023). The MAPK/ERK channel capacity exceeds 6 bit/hour. PLoS computational biology, 19(5), e1011155. Public Library of Science 10.1371/journal.pcbi.1011155

Foley, Nicole M; Mason, Victor C; Harris, Andrew J; Bredemeyer, Kevin R; Damas, Joana; Lewin, Harris A; Eizirik, Eduardo; Gatesy, John; Karlsson, Elinor K; Lindblad-Toh, Kerstin; Springer, Mark S; Murphy, William J; Andrews, Gregory; Armstrong, Joel C; Bianchi, Matteo; Birren, Bruce W; Bredemeyer, Kevin R; Breit, Ana M; Christmas, Matthew J; Clawson, Hiram; ... (2023). A genomic timescale for placental mammal evolution. Science, 380(6643), eabl8189. American Association for the Advancement of Science 10.1126/science.abl8189

Shaw, Sebastian; Roditi, Isabel (2023). The sweet and sour sides of trypanosome social motility. Trends in parasitology, 39(4), pp. 242-250. Elsevier 10.1016/j.pt.2023.01.001

Solberg, Therese; Mason, Victor; Wang, Chundi; Nowacki, Mariusz (2023). Developmental mRNA clearance by PIWI-bound endo-siRNAs in Paramecium. Cell reports, 42(3), p. 112213. Cell Press 10.1016/j.celrep.2023.112213

Roques, Magali; Bindschedler, Annina; Beyeler, Raphael; Heussler, Volker T (2023). Same, same but different: Exploring Plasmodium cell division during liver stage development. PLoS pathogens, 19(3), e1011210. Public Library of Science 10.1371/journal.ppat.1011210

Gao, Yunyi; Solberg, Therese; Wang, Chundi; Gao, Feng (2023). Small RNA-mediated genome rearrangement pathways in ciliates. Trends in genetics, 39(2), pp. 94-97. Elsevier Current Trends 10.1016/j.tig.2022.10.001

Romano, Patricia Silvia; Akematsu, Takahiko; Besteiro, Sébastien; Bindschedler, Annina; Carruthers, Vern B; Chahine, Zeinab; Coppens, Isabelle; Descoteaux, Albert; Alberto Duque, Thabata Lopes; He, Cynthia Y; Heussler, Volker; Le Roch, Karine G; Li, Feng-Jun; de Menezes, Juliana Perrone Bezerra; Menna-Barreto, Rubem Figueiredo Sadok; Mottram, Jeremy C; Schmuckli-Maurer, Jacqueline; Turk, Boris; Tavares Veras, Patricia Sampaio; Salassa, Betiana Nebai; ... (2023). Autophagy in protists and their hosts: When, how and why? Autophagy reports, 2(1) Taylor & Francis 10.1080/27694127.2022.2149211

2022

Gitchev, Todor; Zala, Gabriel; Meister, Peter; Jost, Daniel (2022). 3DPolyS-LE: an accessible simulation framework to model the interplay between chromatin and loop extrusion. Bioinformatics, 38(24), pp. 5454-5456. Oxford University Press 10.1093/bioinformatics/btac705

Hell, Tanja; Dobrzyński, Maciej; Gröflin, Fabian; Reinhardt, Jakob K; Dürr, Lara; Pertz, Olivier; Hamburger, Matthias; Garo, Eliane (2022). Flavonoids from Ericameria nauseosa inhibiting PI3K/AKT pathway in human melanoma cells. Biomedicine & pharmacotherapy, 156(113754), p. 113754. Elsevier 10.1016/j.biopha.2022.113754

Lenart, Peter; Bienertová-Vašků, Julie; Berec, Luděk (2022). Learning mitigates genetic drift. Scientific Reports, 12(1), p. 20403. Nature Publishing Group 10.1038/s41598-022-24748-8

Dürr, Lara; Reinhardt, Jakob K; Dobrzyński, Maciej; Hell, Tanja; Smieško, Martin; Pertz, Olivier; Hamburger, Matthias; Garo, Eliane (2022). A Dimerosesquiterpene and Sesquiterpene Lactones from Artemisia argyi Inhibiting Oncogenic PI3K/AKT Signaling in Melanoma Cells. Journal of natural products, 85(11), pp. 2557-2569. American Chemical Society 10.1021/acs.jnatprod.2c00471

Singh, Aditi; Maurer-Alcalá, Xyrus X; Solberg, Therese; Haeussermann, Lilia; Gisler, Silvan; Ignarski, Michael; Swart, Estienne C; Nowacki, Mariusz (2022). Chromatin remodeling is required for sRNA-guided DNA elimination in Paramecium. The EMBO journal, 41(22), e111839. EMBO Press 10.15252/embj.2022111839

Franke-Fayard, Blandine; Marin-Mogollon, Catherin; Geurten, Fiona J A; Chevalley-Maurel, Séverine; Ramesar, Jai; Kroeze, Hans; Baalbergen, Els; Wessels, Els; Baron, Ludivine; Soulard, Valérie; Martinson, Thomas; Aleshnick, Maya; Huijs, Antonius T G; Subudhi, Amit K; Miyazaki, Yukiko; Othman, Ahmad Syibli; Kolli, Surendra Kumar; Lamers, Olivia A C; Roques, Magali; Stanway, Rebecca R; ... (2022). Creation and preclinical evaluation of genetically attenuated malaria parasites arresting growth late in the liver. npj vaccines, 7(1), p. 139. Nature Publishing Group 10.1038/s41541-022-00558-x

Masuda, Isao; Yamaki, Yuka; Detroja, Rajesh; Tagore, Somnath; Moore, Henry; Maharjan, Sunita; Nakano, Yuko; Christian, Thomas; Matsubara, Ryuma; Lowe, Todd M; Frenkel-Morgenstern, Milana; Hou, Ya-Ming (2022). tRNA methylation resolves codon usage bias at the limit of cell viability. Cell reports, 41(4), p. 111539. Cell Press 10.1016/j.celrep.2022.111539

Aeschlimann, Salome; Kalichava, Ana; Schimanski, Bernd; Berger, Bianca Manuela; Jetishi, Clirim; Stettler, Philip; Ochsenreiter, Torsten; Schneider, André (2022). Single p197 molecules of the mitochondrial genome segregation system of Trypanosoma brucei determine the distance between basal body and outer membrane. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 119(40), e2204294119. National Academy of Sciences NAS 10.1073/pnas.2204294119

Ender, Pascal; Gagliardi, Paolo Armando; Dobrzyński, Maciej; Frismantiene, Agne; Dessauges, Coralie; Höhener, Thomas; Jacques, Marc-Antoine; Cohen, Andrew R; Pertz, Olivier (2022). Spatiotemporal control of ERK pulse frequency coordinates fate decisions during mammary acinar morphogenesis. Developmental cell, 57(18), 2153-2167.e6. Elsevier 10.1016/j.devcel.2022.08.008

Santos, Rui; Ástvaldsson, Ásgeir; Pipaliya, Shweta V; Zumthor, Jon Paulin; Dacks, Joel B; Svärd, Staffan; Hehl, Adrian B; Faso, Carmen (2022). Combined nanometric and phylogenetic analysis of unique endocytic compartments in Giardia lamblia sheds light on the evolution of endocytosis in Metamonada. BMC biology, 20(1), p. 206. BioMed Central 10.1186/s12915-022-01402-3

Wang, Chundi; Solberg, Therese; Maurer-Alcalá, Xyrus X; Swart, Estienne C; Gao, Feng; Nowacki, Mariusz (2022). A small RNA-guided PRC2 complex eliminates DNA as an extreme form of transposon silencing. Cell reports, 40(8), p. 111263. Cell Press 10.1016/j.celrep.2022.111263

Bechara, Sebastian; Kabbani, Lyna; Maurer Alcala, Xyrus; Nowacki, Mariusz (2022). Identification of novel, functional long non-coding RNAs involved in programmed, large scale genome rearrangements. RNA, 28(8), pp. 1110-1127. Cold Spring Harbor Laboratory Press 10.1261/rna.079134.122

Höhener, Thomas Christoph; Landolt, Alex Erich; Dessauges, Coralie; Hinderling, Lucien; Gagliardi, Paolo Armando; Pertz, Olivier (2022). LITOS: a versatile LED illumination tool for optogenetic stimulation. Scientific reports, 12(1), p. 13139. Springer Nature 10.1038/s41598-022-17312-x

Simões, Anabel R; Neto, Marta; Alves, Carolina S; Santos, Mariana B; Fernández-Hernández, Ismael; Veiga-Fernandes, Henrique; Brea, David; Durá, Irene; Encinas, Juan M; Rhiner, Christa (2022). Damage-responsive neuro-glial clusters coordinate the recruitment of dormant neural stem cells in Drosophila. Developmental cell, 57(13), 1661-1675.e7. Elsevier 10.1016/j.devcel.2022.05.015

Vazquez-Pianzola, Paula; Beuchle, Dirk; Saro, Gabriella; Hernández, Greco; Maldonado, Giovanna; Brunßen, Dominique; Meister, Peter; Suter, Beat (2022). Female meiosis II and pronuclear fusion require the microtubule transport factor Bicaudal-D. Development, 149(13) The Company of Biologists 10.1242/dev.199944

Hell, Tanja; Rutz, Adriano; Dürr, Lara; Dobrzyński, Maciej; Reinhardt, Jakob K; Lehner, Timo; Keller, Morris; John, Anika; Gupta, Mahabir; Pertz, Olivier; Hamburger, Matthias; Wolfender, Jean-Luc; Garo, Eliane (2022). Combining Activity Profiling with Advanced Annotation to Accelerate the Discovery of Natural Products Targeting Oncogenic Signaling in Melanoma. Journal of natural products, 85(6), pp. 1540-1554. American Chemical Society 10.1021/acs.jnatprod.2c00146

Lenárt, Sára; Lenárt, Peter; Knopfová, Lucia; Kotasová, Hana; Pelková, Vendula; Sedláková, Veronika; Vacek, Ondřej; Pokludová, Jana; Čan, Vladimír; Šmarda, Jan; Souček, Karel; Hampl, Aleš; Beneš, Petr (2022). TACSTD2 upregulation is an early reaction to lung infection. Scientific reports, 12(1), p. 9583. Springer Nature 10.1038/s41598-022-13637-9

Stojanovski, Klement; Großhans, Helge; Towbin, Benjamin D (2022). Coupling of growth rate and developmental tempo reduces body size heterogeneity in C. elegans. Nature Communications, 13(1), p. 3132. Springer Nature 10.1038/s41467-022-29720-8

Das, Moushumi (2022). Role of Structural Maintenance of Chromosomes (SMC) complexes in interphase genome folding in Caenorhabditis elegans (Unpublished). (Dissertation, University of Bern, Institute of Cell Biology)

Dewar, Caroline E; Oeljeklaus, Silke; Mani, Jan; Mühlhäuser, Wignand W D; von Känel, Corinne; Zimmermann, Johannes; Ochsenreiter, Torsten; Warscheid, Bettina; Schneider, André (2022). Mistargeting of aggregation prone mitochondrial proteins activates a nucleus-mediated posttranscriptional quality control pathway in trypanosomes. Nature Communications, 13(1), p. 3084. Springer Nature 10.1038/s41467-022-30748-z

Dessauges, Coralie; Mikelson, Jan; Dobrzyński, Maciej; Jacques, Marc-Antoine; Frismantiene, Agne; Gagliardi, Paolo Armando; Khammash, Mustafa; Pertz, Olivier (2022). Optogenetic actuator - ERK biosensor circuits identify MAPK network nodes that shape ERK dynamics. Molecular systems biology, 18(6), e10670. EMBO Press 10.15252/msb.202110670

Cote-L'Heureux, Auden; Maurer-Alcalá, Xyrus X; Katz, Laura A (2022). Old genes in new places: A taxon-rich analysis of interdomain lateral gene transfer events. PLoS genetics, 18(6), e1010239. Public Library of Science 10.1371/journal.pgen.1010239

Dürr, Lara; Hell, Tanja; Dobrzyński, Maciej; Mattei, Alberto; John, Anika; Augsburger, Nathanja; Bradanini, Gloria; Reinhardt, Jakob K; Rossberg, Florian; Drobnjakovic, Milos; Gupta, Mahabir P; Hamburger, Matthias; Pertz, Olivier; Garo, Eliane (2022). High-Content Screening Pipeline for Natural Products Targeting Oncogenic Signaling in Melanoma. Journal of natural products, 85(4), pp. 1006-1017. American Chemical Society 10.1021/acs.jnatprod.1c01154

Ho, Manh Tin; Lu, Jiongming; Vazquez-Pianzola, Maria; Suter, Beat (2022). α-Phenylalanyl tRNA synthetase competes with Notch signaling through its N-terminal domain. PLoS genetics, 18(4), e1010185. Public Library of Science 10.1371/journal.pgen.1010185

Zuin, Jessica; Roth, Gregory; Zhan, Yinxiu; Cramard, Julie; Redolfi, Josef; Piskadlo, Ewa; Mach, Pia; Kryzhanovska, Mariya; Tihanyi, Gergely; Kohler, Hubertus; Eder, Mathias; Leemans, Christ; van Steensel, Bas; Meister, Peter; Smallwood, Sebastien; Giorgetti, Luca (2022). Nonlinear control of transcription through enhancer-promoter interactions. Nature, 604(7906), pp. 571-577. Springer Nature 10.1038/s41586-022-04570-y

Knüsel, Sebastian; Jenni, Aurelio; Benninger, Mattias; Bütikofer, Peter; Roditi, Isabel (2022). Persistence of Trypanosoma brucei as early procyclic forms and social motility are dependent on glycosylphosphatidylinositol transamidase. Molecular microbiology, 117(4), pp. 802-817. Wiley 10.1111/mmi.14873

Miozzo, Federico; Valencia-Alarcón, Eva P; Stickley, Luca; Majcin Dorcikova, Michaëla; Petrelli, Francesco; Tas, Damla; Loncle, Nicolas; Nikonenko, Irina; Bou Dib, Peter; Nagoshi, Emi (2022). Maintenance of mitochondrial integrity in midbrain dopaminergic neurons governed by a conserved developmental transcription factor. Nature Communications, 13(1), p. 1426. Springer Nature 10.1038/s41467-022-29075-0

Rzeszutek, Iwona; Swart, Estienne C; Pabian-Jewuła, Sylwia; Russo, Antonietta; Nowacki, Mariusz (2022). Early developmental, meiosis-specific proteins - Spo11, Msh4-1, and Msh5 - Affect subsequent genome reorganization in Paramecium tetraurelia. Biochimica et biophysica acta. Molecular cell research, 1869(6), p. 119239. Elsevier 10.1016/j.bbamcr.2022.119239

Faso, Carmen; Hehl, Adrian B (2022). Editorial: The Cell Biology of Protist Parasite-Host Interfaces. Frontiers in cell and developmental biology, 10, p. 866421. Frontiers 10.3389/fcell.2022.866421

Dobrzyński, Maciej; Jacques, Marc-Antoine; Pertz, Olivier (2022). Mining of Single-Cell Signaling Time-Series for Dynamic Phenotypes with Clustering. Methods in molecular biology, 2488, pp. 183-206. Springer 10.1007/978-1-0716-2277-3_13

Beneke, Tom; Dobramysl, Ulrich; Catta-Preta, Carolina Moura Costa; Mottram, Jeremy Charles; Gluenz, Eva; Wheeler, Richard J (2022). Genome sequence of Leishmania mexicana MNYC/BZ/62/M379 expressing Cas9 and T7 RNA polymerase. Wellcome open research, 7(294), p. 294. Wellcome Trust 10.12688/wellcomeopenres.18575.1

2021

Duruz, Jules; Kaltenrieder, Cyrielle; Ladruner, Peter; Bruggmann, Rémy; Martinez, Pedro; Sprecher, Simon (2021). Acoel Single-Cell Transcriptomics: Cell Type Analysis of a Deep Branching Bilaterian. Molecular biology and evolution, 38(5), pp. 1888-1904. Oxford University Press 10.1093/molbev/msaa333

Loewith, Robbie; Roux, Aurélien; Pertz, Olivier (2021). Chemical-Biology-derived in vivo Sensors: Past, Present, and Future. CHIMIA, 75(12), pp. 1017-1021. Schweizerische Chemische Gesellschaft 10.2533/chimia.2021.1017

Kalichava, Ana; Ochsenreiter, Torsten (2021). Ultrastructure expansion microscopy in Trypanosoma brucei. Open Biology, 11(10), p. 210132. The Royal Society Publishing 10.1098/rsob.210132

Pipaliya, Shweta V.; Santos, Rui; Salas-Leiva, Dayana; Balmer, Erina A.; Wirdnam, Corina D.; Roger, Andrew J.; Hehl, Adrian B.; Faso, Carmen; Dacks, Joel B. (2021). Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata. BMC biology, 19(1), p. 167. BioMed Central 10.1186/s12915-021-01077-2

Jenni, Aurelio; Knüsel, Sebastian; Nagar, Rupa; Benninger, Mattias; Häner, Robert; Ferguson, Michael A J; Roditi, Isabel; Menon, Anant K; Bütikofer, Peter (2021). Elimination of GPI2 suppresses glycosylphosphatidylinositol GlcNAc transferase activity and alters GPI glycan modification in Trypanosoma brucei. The journal of biological chemistry, 297(2), p. 100977. American Society for Biochemistry and Molecular Biology 10.1016/j.jbc.2021.100977

Gagliardi, Paolo Armando; Dobrzyński, Maciej; Jacques, Marc-Antoine; Dessauges, Coralie; Ender, Pascal; Blum, Yannick; Hughes, Robert M; Cohen, Andrew R; Pertz, Olivier (2021). Collective ERK/Akt activity waves orchestrate epithelial homeostasis by driving apoptosis-induced survival. Developmental cell, 56(12), 1712-1726.e6. Elsevier 10.1016/j.devcel.2021.05.007

Chippalkatti, Rohan; Suter, Beat (2021). 5-Ethynyl-2'-Deoxyuridine/Phospho-Histone H3 Dual-Labeling Protocol for Cell Cycle Progression Analysis in Drosophila Neural Stem Cells. Journal of visualized experiments(171) MYJoVE Corporation 10.3791/62642; 10.3791/62642-v

Naguleswaran, Arunasalam; Alves Fernandes, Paula; Bevkal Subramanyaswamy, Shubha; Rehmann, Ruth; Nicholson, Pamela; Roditi, Isabel (2021). Draft genome of Trypanosoma b. brucei EATRO1125 (AnTaR1 serodeme) strain [Dataset]. In: EATRO1125 (AnTaR1 serodeme) pseudo chromosomes.

Naguleswaran, Arunasalam; Alves Fernandes, Paula; Bevkal Subramanyaswamy, Shubha; Rehmann, Ruth; Nicholson, Pamela; Roditi, Isabel (2021). Trypanosoma brucei EATRO1125 draft genome assembly (Contigs) [Dataset]. In: Trypanosoma brucei (EATRO1125) genome contigs.

Jacques, Marc-Antoine; Dobrzyński, Maciej; Gagliardi, Paolo Armando; Sznitman, Raphael; Pertz, Olivier (2021). CODEX, a neural network approach to explore signaling dynamics landscapes. Molecular systems biology, 17(4), e10026. EMBO Press 10.15252/msb.202010026

Amodeo, Simona; Kalichava, Ana; Fradera-Sola, Albert; Bertiaux-Lequoy, Eloïse; Guichard, Paul; Butter, Falk; Ochsenreiter, Torsten (2021). Characterization of the novel mitochondrial genome segregation factor TAP110 in Trypanosoma brucei. Journal of cell science, 134(5) Company of Biologists Limited 10.1242/jcs.254300

Mejia, Pedro; Treviño-Villarreal, J Humberto; De Niz, Mariana; Meibalan, Elamaran; Longchamp, Alban; Reynolds, Justin S; Turnbull, Lindsey B; Opoka, Robert O; Roussilhon, Christian; Spielmann, Tobias; Ozaki, C Keith; Heussler, Volker T.; Seydel, Karl B; Taylor, Terrie E; John, Chandy C; Milner, Danny A; Marti, Matthias; Mitchell, James R (2021). Adipose tissue parasite sequestration drives leptin production in mice and correlates with human cerebral malaria. Science Advances, 7(13) American Association for the Advancement of Science 10.1126/sciadv.abe2484

Haindrich, Alexander C.; Ernst, Viona; Naguleswaran, Arunasalam; Oliveres, Quentin-Florian; Roditi, Isabel; Rentsch, Doris (2021). Nutrient availability regulates proline/alanine transporters in Trypanosoma brucei. Journal of biological chemistry, 296, p. 100566. American Society for Biochemistry and Molecular Biology 10.1016/j.jbc.2021.100566

Zhou, Bin; Tran, Thi Nhu Thao; Hoffmann, Donata; Taddeo, Adriano; Ebert, Nadine; Labroussaa, Fabien; Pohlmann, Anne; King, Jacqueline; Steiner, Silvio; Kelly, Jenna N.; Portmann, Jasmine; Halwe, Nico Joel; Ulrich, Lorenz; Trüeb, Bettina Salome; Fan, Xiaoyu; Hoffmann, Bernd; Wang, Li; Thomann, Lisa; Lin, Xudong; Stalder, Hanspeter; ... (2021). SARS-CoV-2 spike D614G change enhances replication and transmission. Nature, 592(7852), pp. 122-127. Springer Nature 10.1038/s41586-021-03361-1

Bevkal, Shubha; Naguleswaran, Arunasalam; Rehmann, Ruth; Kaiser, Marcel; Heller, Manfred; Roditi, Isabel (2021). An Alba-domain protein required for proteome remodelling during trypanosome differentiation and host transition. PLoS pathogens, 17(1), e1009239. Public Library of Science 10.1371/journal.ppat.1009239

Bindschedler, Annina; Wacker, Rahel; Egli, Jessica; Eickel, Nina; Schmuckli-Maurer, Jacqueline; Franke-Fayard, Blandine M; Janse, Chris J; Heussler, Volker T. (2021). Plasmodium berghei sporozoites in nonreplicative vacuoles are eliminated by a PI3P-mediated autophagy-independent pathway. Cellular microbiology, 23(1), e13271. Wiley 10.1111/cmi.13271

Klionsky, Daniel J; Abdel-Aziz, Amal Kamal; Abdelfatah, Sara; Abdellatif, Mahmoud; Abdoli, Asghar; Abel, Steffen; Abeliovich, Hagai; Abildgaard, Marie H; Abudu, Yakubu Princely; Acevedo-Arozena, Abraham; Adamopoulos, Iannis E; Adeli, Khosrow; Adolph, Timon E; Adornetto, Annagrazia; Aflaki, Elma; Agam, Galila; Agarwal, Anupam; Aggarwal, Bharat B; Agnello, Maria; Agostinis, Patrizia; ... (2021). Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy, 17(1), pp. 1-382. Taylor & Francis 10.1080/15548627.2020.1797280

Ho, Manh Tin; Lu, Jiongming; Brunssen, Dominique Yvonne; Suter, Beat (2021). An aminoacylation independent activity of PheRS/FARS promotes growth and proliferation. Disease models & mechanisms, 14(3), dmm048132. Company of Biologists Ltd. 10.1242/dmm.048132

De Niz, Mariana; Caldelari, Reto; Kaiser, Gesine; Zuber, Benoît; Heo, Won Do; Heussler, Volker T.; Agop-Nersesian, Carolina (2021). Hijacking of the host cell Golgi by Plasmodium berghei liver stage parasites. Journal of cell science, 134(10) Company of Biologists Limited 10.1242/jcs.252213

Balmer, Erina A.; Faso, Carmen (2021). The Road Less Traveled? Unconventional Protein Secretion at Parasite–Host Interfaces. Frontiers in cell and developmental biology, 9, p. 662711. Frontiers 10.3389/fcell.2021.662711

Mattei, Alberto (2021). Exploring Signaling Mechanisms regulating genetic and non-genetic Drug Resistance in Melanoma (Unpublished). (Dissertation, Institute of Cell Biology, Faculty of Science)

2020

Gomez-Saldivar, Georgina; Osuna-Luque, Jaime; Semple, Jennifer I.; Glauser, Dominique A.; Jarriault, Sophie; Meister, Peter (2020). Tissue-Specific Transcription Footprinting Using RNA PoI DamID (RAPID) in Caenorhabditis elegans. Genetics, 216(4), pp. 931-945. Genetics Society of America 10.1534/genetics.120.303774

Chippalkatti, Rohan; Egger, Boris; Suter, Beat (2020). Mms19 promotes spindle microtubule assembly in Drosophila neural stem cells. PLoS genetics, 16(11), e1008913. Public Library of Science 10.1371/journal.pgen.1008913

Schubert, Katharina; Karousis, Evangelos D.; Jomaa, Ahmad; Scaiola, Alain; Echeverria, Blanca; Gurzeler, Lukas-Adrian; Leibundgut, Marc; Thiel, Volker; Mühlemann, Oliver; Ban, Nenad (2020). SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation. Nature structural & molecular biology, 27(10), pp. 959-966. Springer Nature 10.1038/s41594-020-0511-8

Putrianti, Elyzana Dewi; Schmidt-Christensen, Anja; Heussler, Volker; Matuschewski, Kai; Ingmundson, Alyssa (2020). A Plasmodium cysteine protease required for efficient transition from the liver infection stage. PLoS pathogens, 16(9), e1008891. Public Library of Science 10.1371/journal.ppat.1008891

Baudouin, Hélène Clémentine Margareta; Pfeiffer, Laura; Ochsenreiter, Torsten (2020). A comparison of three approaches for the discovery of novel tripartite attachment complex proteins in Trypanosoma brucei. PLoS neglected tropical diseases, 14(9), e0008568. Public Library of Science 10.1371/journal.pntd.0008568

Allen, Sarah E.; Nowacki, Mariusz (2020). Roles of non-coding RNAs in ciliate genome architecture. Journal of molecular biology, 432(15), pp. 4186-4198. Elsevier 10.1016/j.jmb.2019.12.042

Shaw, Sebastian; Knüsel, Sebastian; Hoenner, Sarah; Roditi, Isabel (2020). A transient CRISPR/Cas9 expression system for genome editing in Trypanosoma brucei. BMC research notes, 13(1), p. 268. Biomed Central 10.1186/s13104-020-05089-z

Müller, Paul M; Rademacher, Juliane; Bagshaw, Richard D; Wortmann, Celina; Barth, Carolin; van Unen, Jakobus; Alp, Keziban M; Giudice, Girolamo; Eccles, Rebecca L; Heinrich, Louise E; Pascual-Vargas, Patricia; Sanchez-Castro, Marta; Brandenburg, Lennart; Mbamalu, Geraldine; Tucholska, Monika; Spatt, Lisa; Czajkowski, Maciej T; Welke, Robert-William; Zhang, Sunqu; Nguyen, Vivian; ... (2020). Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions. Nature cell biology, 22(4), pp. 498-511. Springer Nature 10.1038/s41556-020-0488-x

Aphasizheva, Inna; Alfonzo, Juan; Carnes, Jason; Cestari, Igor; Cruz-Reyes, Jorge; Göringer, H. Ulrich; Hajduk, Stephen; Lukeš, Julius; Madison-Antenucci, Susan; Maslov, Dmitri A.; McDermott, Suzanne M.; Ochsenreiter, Torsten; Read, Laurie K.; Salavati, Reza; Schnaufer, Achim; Schneider, André; Simpson, Larry; Stuart, Kenneth; Yurchenko, Vyacheslav; Zhou, Z. Hong; ... (2020). Lexis and Grammar of Mitochondrial RNA Processing in Trypanosomes. Trends in parasitology, 36(4), pp. 337-355. Elsevier Current Trends 10.1016/j.pt.2020.01.006

Cernikova, Lenka; Faso, Carmen; Hehl, Adrian B. (2020). Phosphoinositide-binding proteins mark, shape and functionally modulate highly-diverged endocytic compartments in the parasitic protist Giardia lamblia. PLoS pathogens, 16(2), e1008317. Public Library of Science 10.1371/journal.ppat.1008317

Huber, Sandra; Bär, Anina; Epp, Selina; Schmuckli-Maurer, Jacqueline; Eberhard, Naja; Humbel, Bruno M; Hemphill, Andrew; Woods, Kerry (2020). Recruitment of Host Nuclear Pore Components to the Vicinity of Theileria Schizonts. mSphere, 5(1) American Society for Microbiology 10.1128/mSphere.00709-19

Brancucci, Nicolas M.B.; Heussler, Volker T.; Grüring, Christof (2020). Targeting Plasmodium Plasmepsin V: Hitting Two Birds with One Stone. Trends in parasitology, 36(2), pp. 85-87. Elsevier Current Trends 10.1016/j.pt.2019.12.006

Kagawa, Kotaro; Seehausen, Ole (2020). The propagation of admixture-derived adaptive radiation potential. Proceedings of the Royal Society. Series B - biological sciences, 287(1934), p. 20200941. Royal Society of London 10.1098/rspb.2020.0941

De Niz, Mariana; Kehrer, Jessica; Brancucci, Nicolas M B; Moalli, Federica; Reynaud, Emmanuel G; Stein, Jens V; Frischknecht, Friedrich (2020). 3D imaging of undissected optically cleared Anopheles stephensi mosquitoes and midguts infected with Plasmodium parasites. PLoS ONE, 15(9), e0238134. Public Library of Science 10.1371/journal.pone.0238134

Burda, Paul-Christian; Bisio, Hugo; Marq, Jean-Baptiste; Soldati-Favre, Dominique; Heussler, Volker (2020). CRISPR/Cas9-Based Knockout of GNAQ Reveals Differences in Host Cell Signaling Necessary for Egress of Apicomplexan Parasites. mSphere, 5(6) American Society for Microbiology 10.1128/mSphere.01001-20

Grand, Morgane; Waqasi, Mishelle; Demarta-Gatsi, Claudia; Wei, Yu; Peronet, Roger; Commere, Pierre-Henri; Puig, Amandine; Axelrod, Jonathan; Caldelari, Reto; Heussler, Volker; Amino, Rogerio; Mecheri, Salaheddine (2020). Hepatic Inflammation Confers Protective Immunity Against Liver Stages of Malaria Parasite. Frontiers in immunology, 11, p. 585502. Frontiers Research Foundation 10.3389/fimmu.2020.585502

2019

Hulpia, Fabian; Mabille, Dorien; Campagnaro, Gustavo; Schumann, Gabriela; Maes, Louis; Roditi, Isabel; Hofer, Anders; de Koning, Harry; Caljon, Guy; Von Calenbergh, Serge (2019). Combining tubercidin and cordycepin scaffolds results in highly active candidates to treat late-stage sleeping sickness. Nature Communications, 10(1), p. 5564. Springer Nature 10.1038/s41467-019-13522-6

Cooper, Sinclair; Wadsworth, Elizabeth S; Ochsenreiter, Torsten; Ivens, Alasdair; Savill, Nicholas J; Schnaufer, Achim (2019). Assembly and annotation of the mitochondrial minicircle genome of a differentiation-competent strain of Trypanosoma brucei. Nucleic acids research, 47(21), pp. 11304-11325. Oxford University Press 10.1093/nar/gkz928

Cernikova, Lenka; Faso, Carmen; Hehl, Adrian B. (2019). Roles of Phosphoinositides and Their binding Proteins in Parasitic Protozoa. Trends in parasitology, 35(12), pp. 996-1008. Elsevier Current Trends 10.1016/j.pt.2019.08.008

Blum, Yannick; Mikelson, Jan; Dobrzynski, Maciej; Ryu, Hyunryul; Jacques, Marc-Antoine; Jeon, Noo Li; Khammash, Mustafa; Pertz, Olivier (2019). Temporal perturbation of ERK dynamics reveals network architecture of FGF2/MAPK signaling. Molecular systems biology, 15(11), e8947. EMBO Press 10.15252/msb.20198947

Valencia Lopez, Maria Jose; Schimmeck, Hanna; Gropengießer, Julia; Middendorf, Lukas; Quitmann, Melanie; Schneider, Carola; Holstermann, Barbara; Wacker, Rahel; Heussler, Volker; Reimer, Rudolph; Aepfelbacher, Martin; Ruckdeschel, Klaus (2019). Activation of the macroautophagy pathway by Yersinia enterocolitica promotes intracellular multiplication and egress of yersiniae from epithelial cells. Cellular microbiology, 21(9), e13046. Wiley 10.1111/cmi.13046

Aubry, Evelyne M; Oelhafen, Stephan; Fankhauser, Niklaus; Raio, Luigi; Cignacco, Eva L (2019). Adverse perinatal outcomes for obese women are influenced by the presence of comorbid diabetes and hypertensive disorders. Scientific Reports, 9(1), p. 9793. Nature Publishing Group 10.1038/s41598-019-46179-8

Maurer-Alcalá, Xyrus X.; Nowacki, Mariusz (2019). Evolutionary origins and impacts of genome architecture in ciliates. Annals of the New York Academy of Sciences, 1447(1), pp. 110-118. New York Academy of Sciences 10.1111/nyas.14108

Coraggio, Francesca (2019). Involvement of epigenetic factors and metabolism in pluripotency maintenance in C. elegans (Unpublished). (Dissertation, Institute of Cell Biology, Science)

Niklaus, Livia; Agop-Nersesian, C; Schmuckli-Maurer, Jacqueline; Wacker, Rahel; Grünig, V; Heussler, Volker (2019). Deciphering host lysosome-mediated elimination of Plasmodium berghei liver stage parasites. Scientific Reports, 9(1), p. 7967. Nature Publishing Group 10.1038/s41598-019-44449-z

Padeken, Jan; Zeller, Peter; Towbin, Benjamin; Katic, Iskra; Kalck, Veronique; Methot, Stephen P; Gasser, Susan M (2019). Synergistic lethality between BRCA1 and H3K9me2 loss reflects satellite derepression. Genes & development, 33(7-8), pp. 436-451. Cold Spring Harbor Laboratory Press 10.1101/gad.322495.118

Shaw, Sebastian; DeMarco, Stephanie F; Rehmann, Ruth; Wenzler, Tanja; Florini, Francesca; Roditi, Isabel; Hill, Kent L (2019). Flagellar cAMP signaling controls trypanosome progression through host tissues. Nature communications, 10(1), p. 803. Nature Publishing Group 10.1038/s41467-019-08696-y

Suter, Beat (2019). Useful flies. International journal of molecular sciences, 20(4), p. 871. MDPI 10.3390/ijms20040871

Gagliardi, Paolo Armando; Pertz, Olivier (2019). Developmental Erk Signaling Illuminated. Developmental cell, 48(3), pp. 289-290. Elsevier 10.1016/j.devcel.2019.01.022

Bagonis, Maria; Fusco, Ludovico; Pertz, Olivier; Danuser, Gaudenz (2019). Automated profiling of growth cone heterogeneity defines relations between morphology and motility. Journal of cell biology, 218(1), pp. 350-379. Rockefeller Institute Press 10.1083/jcb.201711023

Florini, Francesca; Naguleswaran, Arunasalam; Gharib, Walid H; Bringaud, Frédéric; Roditi, Isabel (2019). Unexpected diversity in eukaryotic transcription revealed by the retrotransposon hotspot family of Trypanosoma brucei. Nucleic acids research, 47(4), pp. 1725-1739. Oxford University Press 10.1093/nar/gky1255

Rougeux, Clément; Gagnaire, Pierre‐Alexandre; Praebel, Kim; Seehausen, Ole; Bernatchez, Louis (2019). Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister species complex. Molecular Ecology, 28(19), pp. 4388-4403. Wiley-Blackwell 10.1111/mec.15226

Faso, Carmen; Hehl, Adrian B. (2019). A cytonaut's guide to protein trafficking in Giardia lamblia. Advances in Parasitology, 106, pp. 105-127. Elsevier 10.1016/bs.apar.2019.08.001

Stanway, Rebecca R.; Bushell, Ellen; Chiappino-Pepe, Anush; Roques, Magali; Sanderson, Theo; Franke-Fayard, Blandine; Caldelari, Reto; Golomingi, Murielle; Nyonda, Mary; Pandey, Vikash; Schwach, Frank; Chevalley, Séverine; Ramesar, Jai; Metcalf, Tom; Herd, Colin; Burda, Paul-Christian; Rayner, Julian C.; Soldati-Favre, Dominique; Janse, Chris J.; Hatzimanikatis, Vassily; ... (2019). Genome-Scale Identification of Essential Metabolic Processes for Targeting the Plasmodium Liver Stage. Cell, 179(5), 1112-1128.e26. Cell Press 10.1016/j.cell.2019.10.030

2018

Coraggio, Francesca; Püschel, Ringo; Marti, Alisha; Meister, Pierre (2018). Polycomb and Notch signaling regulate cell proliferation potential during Caenorhabditis elegans life cycle. Life science alliance, 2(1), e201800170. EMBO Press 10.26508/lsa.201800170

De Niz, Mariana; Heussler, Volker (2018). Rodent malaria models: insights into human disease and parasite biology. Current opinion in microbiology, 46, pp. 93-101. Elsevier 10.1016/j.mib.2018.09.003

Bischerour, Julien; Bhullar, Simran; Denby Wilkes, Cyril; Régnier, Vinciane; Mathy, Nathalie; Dubois, Emeline; Singh, Aditi; Swart, Estienne Carl; Arnaiz, Olivier; Sperling, Linda; Nowacki, Mariusz; Bétermier, Mireille (2018). Six domesticated PiggyBac transposases together carry out programmed DNA elimination in . eLife, 7 eLife Sciences Publications 10.7554/eLife.37927

Schneider, André; Ochsenreiter, Torsten (2018). Failure is not an option – mitochondrial genome segregation in trypanosomes. Journal of cell science, 131(18), jcs221820. Company of Biologists Limited 10.1242/jcs.221820

Brauchle, Michael Anton; Bilican, Adem; Eyer, Claudia; Bailly, X; Martinez, P; Ladurner, P; Bruggmann, Rémy; Sprecher, SG (2018). Xenacoelomorpha Survey Reveals That All 11 Animal Homeobox Gene Classes Were Present in the First Bilaterians. Genome biology and evolution, 10(9), pp. 2205-2217. Oxford University Press 10.1093/gbe/evy170

Suter, Beat (2018). RNA localization and transport. Biochimica et biophysica acta - gene regulatory mechanisms, 1861(10), pp. 938-951. Elsevier 10.1016/j.bbagrm.2018.08.004

Jojic, Borka; Amodeo, Simona; Ochsenreiter, Torsten (2018). The translationally controlled tumor protein TCTP is involved in cell cycle progression and heat stress response in the bloodstream form of Trypanosoma brucei. Microbial cell, 5(10), pp. 460-468. Shared Science Publishers OG 10.15698/mic2018.10.652

Ryu, H; Chung, M; Pertz, Olivier; Jeon, NL (2018). Integrated Platform for Monitoring Single-cell MAPK Kinetics in Computer-controlled Temporal Stimulations. Scientific Reports, 8(1), p. 11126. Nature Publishing Group 10.1038/s41598-018-28873-1

Korem Kohanim, Yael; Levi, Dikla; Jona, Ghil; Towbin, Benjamin D.; Bren, Anat; Alon, Uri (2018). A Bacterial Growth Law out of Steady State. Cell reports, 23(10), pp. 2891-2900. Cell Press 10.1016/j.celrep.2018.05.007

Song, Jiyoung; Ryu, Hyunryul; Chung, Minhwan; Kim, Youngtaek; Blum, Yannick; Lee, Sung Sik; Pertz, Olivier; Jeon, Noo Li (2018). Microfluidic platform for single cell analysis under dynamic spatial and temporal stimulation. Biosensors & bioelectronics, 104, pp. 58-64. Elsevier 10.1016/j.bios.2017.12.038

Agop-Nersesian, Carolina; Niklaus, Livia; Wacker, Rahel; Heussler, Volker (2018). Host cell cytosolic immune response during Plasmodium liver stage development. FEMS microbiology reviews, 42(3), pp. 324-334. Blackwell Publishing Ltd 10.1093/femsre/fuy007

De Niz, Mariana; Meibalan, Elamaran; Mejia, Pedro; Ma, Siyuan; Brancucci, Nicolas M B; Agop-Nersesian, Carolina; Mandt, Rebecca; Ngotho, Priscilla; Hughes, Katie R; Waters, Andrew P; Huttenhower, Curtis; Mitchell, James R; Martinelli, Roberta; Frischknecht, Friedrich; Seydel, Karl B; Taylor, Terrie; Milner, Danny; Heussler, Volker T.; Marti, Matthias (2018). Plasmodium gametocytes display homing and vascular transmigration in the host bone marrow. Science Advances, 4(5), eaat3775. American Association for the Advancement of Science 10.1126/sciadv.aat3775

Naguleswaran, Arunasalam; Doiron, Nicholas; Roditi, Isabel (2018). RNA-Seq analysis validates the use of culture-derived Trypanosoma brucei and provides new markers for mammalian and insect life-cycle stages. BMC Genomics, 19(1), p. 227. BioMed Central 10.1186/s12864-018-4600-6

Jojic, Borka; Amodeo, Simona; Bregy, Irina; Ochsenreiter, Torsten (2018). Distinct 3′ UTRs regulate the life-cycle-specific expression of two TCTP paralogs in Trypanosoma brucei. Journal of cell biology, 131(9) Rockefeller Institute Press 10.1242/jcs.206417

Amodeo, Simona; Jakob, Martin; Ochsenreiter, Torsten (2018). Characterization of the novel mitochondrial genome replication factor MiRF172 in Trypanosoma brucei. Journal of cell science, 131(8) Company of Biologists Limited 10.1242/jcs.211730

Nowacki, Mariusz; Höhener, Cristina; Hug, Iris Sandra (2018). Dicer-like Enzymes with Sequence Cleavage Preferences. Cell, 173(1), 234-247.e7. Cell Press 10.1016/j.cell.2018.02.029

Schmidt, Remo S.; Pereira de Macêdo, Juan; Steinmann, Michael Eduard; González Salgado, Amaia; Bütikofer, Peter; Sigel, Erwin; Rentsch, Doris; Mäser, Pascal (2018). Transporters of Trypanosoma brucei -phylogeny, physiology, pharmacology. FEBS journal, 285(6), pp. 1012-1023. Wiley 10.1111/febs.14302

Schnider, Cilly Bernardette; Bausch-Fluck, Damaris; Brühlmann, Francis; Heussler, Volker; Burda, Paul-Christian (2018). BioID Reveals Novel Proteins of the Parasitophorous Vacuole Membrane. mSphere, 3(1), e00522-17. American Society for Microbiology 10.1128/mSphere.00522-17

Nag, Rishita Narendra; Niggli, Selina; Sousa-Guimarães, Sofia; Vazquez Pianzola, Maria Paula; Vazquez Pianzola, Maria Paula; Suter, Beat (2018). Mms19 is a mitotic gene that permits Cdk7 to be fully active as a Cdk-activating kinase. Development, 145(2) Company of Biologists Limited 10.1242/dev.156802

Hoffmann, Anneliese; Käser, Sandro; Jakob, Martin; Amodeo, Simona; Peitsch, Camille Françoise; Týč, Jiří; Vaughan, Sue; Zuber, Benoît; Schneider, André; Ochsenreiter, Torsten (2018). Molecular model of the mitochondrial genome segregation machinery in Trypanosoma brucei. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 115(8), E1809-E1818. National Academy of Sciences NAS 10.1073/pnas.1716582115

Dolde, Christine; Bischof, Joachim; Grüter, Simon; Montada, Anna; Halekotte, Jakob; Peifer, Christian; Kalbacher, Hubert; Baumann, Ulrich; Knippschild, Uwe; Suter, Beat (2018). A CK1 FRET biosensor reveals that DDX3X is an essential activator of CK1ε. Journal of cell science, 131(1) Company of Biologists Limited 10.1242/jcs.207316

Neeb, Zachary Thomas; Nowacki, Mariusz (2018). RNA-mediated transgenerational inheritance in ciliates and plants. Chromosoma, 127(1), pp. 19-27. Springer 10.1007/s00412-017-0655-4

Michelini, Flavia; Jalihal, Ameya P.; Francia, Sofia; Meers, Chance; Neeb, Zachary Thomas; Rossiello, Francesca; Gioia, Ubaldo; Aguado, Julio; Jones-Weinert, Corey; Luke, Brian; Biamonti, Giuseppe; Nowacki, Mariusz; Storici, Francesca; Carninci, Piero; Walter, Nils G.; Fagagna, Fabrizio d’Adda di (2018). From “Cellular” RNA to “Smart” RNA: Multiple Roles of RNA in Genome Stability and Beyond. Chemical reviews, 118(8), pp. 4365-4403. American Chemical Society 10.1021/acs.chemrev.7b00487

Gonzalez, Adriana Verenisse; Meister, Pierre (2018). Chromosomes and Chromatin in the Nematode Nucleus. In: Lavelle, Christophe; Victor, Jean-Marc (eds.) Nuclear Architecture and Dynamics. Translational Epigenetics Series: Vol. 2 (pp. 533-556). Elsevier 10.1016/B978-0-12-803480-4.00023-5

Bhullar, Simran; Denby Wilkes, Cyril; Arnaiz, Olivier; Nowacki, Mariusz; Sperling, Linda; Meyer, Eric (2018). A mating-type mutagenesis screen identifies a zinc-finger protein required for specific DNA excision events in Paramecium. Nucleic acids research, 46(18), pp. 9550-9562. Oxford University Press 10.1093/nar/gky772

Singh, Aditi; Vancura, Adrienne; Woycicki, Rafal K.; Hogan, Daniel J; Hendrick, Alan G; Nowacki, Mariusz (2018). Determination of the presence of 5-methylcytosine in Paramecium tetraurelia. PLoS ONE, 13(10), e0206667. Public Library of Science 10.1371/journal.pone.0206667

Cernikova, Lenka; Faso, Carmen; Hehl, Adrian B. (2018). Five facts about Giardia lamblia. PLoS pathogens, 14(9), e1007250. Public Library of Science 10.1371/journal.ppat.1007250

2017

Saini, Ekta; Zeeshan, Mohammad; Brady, Declan; Pandey, Rajan; Kaiser, Gesine; Koreny, Ludek; Kumar, Pradeep; Thakur, Vandana; Tatiya, Shreyansh; Katris, Nicholas J; Limenitakis Stanway, Rebecca; Kaur, Inderjeet; Green, Judith L; Bottrill, Andrew R; Guttery, David S; Waller, Ross F; Heussler, Volker; Holder, Anthony A; Mohmmed, Asif; Malhotra, Pawan; ... (2017). Photosensitized INA-Labelled protein 1 (PhIL1) is novel component of the inner membrane complex and is required for Plasmodium parasite development. Scientific Reports, 7(1), p. 15577. Nature Publishing Group 10.1038/s41598-017-15781-z

Pino, Paco; Caldelari, Reto; Mukherjee, Budhaditya; Vahokoski, Juha; Klages, Natacha; Maco, Bohumil; Collins, Christine R; Blackman, Michael J; Kursula, Inari; Heussler, Volker; Brochet, Mathieu; Soldati-Favre, Dominique (2017). A multistage antimalarial targets the plasmepsins IX and X essential for invasion and egress. Science, 358(6362), pp. 522-528. American Association for the Advancement of Science 10.1126/science.aaf8675

Kempf, Anissa; Boda, Enrica; Kwok, Jessica C F; Fritz, Rafael; Grande, Valentina; Kaelin, Andrea M; Ristic, Zorica; Schmandke, Andre; Schmandke, Antonio; Tews, Bjoern; Fawcett, James W; Pertz, Olivier; Buffo, Annalisa; Schwab, Martin E (2017). Control of Cell Shape, Neurite Outgrowth, and Migration by a Nogo-A/HSPG Interaction. Developmental cell, 43(1), 24-34.e5. Cell Press 10.1016/j.devcel.2017.08.014

Wacker, Rahel Corina; Eickel, Nina; Schmuckli, Jacqueline; Annoura, Takeshi; Niklaus, Livia; Khan, Shahid M; Guan, Jun-Lin; Heussler, Volker (2017). LC3-association with the parasitophorous vacuole membrane of Plasmodium berghei liver stages follows a noncanonical autophagy pathway. Cellular microbiology, 19(10) Wiley 10.1111/cmi.12754

Naguleswaran, Arunasalam; Roditi, Isabel (2017). Rodent-free cyclical transmission of Trypanosoma brucei brucei. Molecular and biochemical parasitology, 217, pp. 16-18. Elsevier 10.1016/j.molbiopara.2017.08.005

Dessauges, Coralie; Pertz, Olivier (2017). Developmental ERK Signaling Goes Digital. Developmental cell, 42(5), pp. 443-444. Cell Press 10.1016/j.devcel.2017.08.023

Hopp, Christine S; Bennett, Brandy L; Mishra, Satish; Lehmann, Christine; Hanson, Kirsten K; Lin, Jing-Wen; Rousseau, Kimberly; Carvalho, Filomena A; van der Linden, Wouter A; Santos, Nuno C; Bogyo, Matthew; Khan, Shahid M; Heussler, Volker; Sinnis, Photini (2017). Deletion of the rodent malaria ortholog for falcipain-1 highlights differences between hepatic and blood stage merozoites. PLoS pathogens, 13(9), e1006586. Public Library of Science 10.1371/journal.ppat.1006586

Burda, Paul-Christian; Schaffner, Marco; Kaiser, Gesine; Roques, Magali Hélène Yvonne; Zuber, Benoît; Heussler, Volker (2017). A Plasmodium plasma membrane reporter reveals membrane dynamics by live-cell microscopy. Scientific Reports, 7(1), p. 9740. Nature Publishing Group 10.1038/s41598-017-09569-4

Kaiser, Gesine; De Niz Hidalgo, Mariana Isabel; Burda, Paul-Christian; Niklaus, Livia; Limenitakis Stanway, Rebecca; Heussler, Volker (2017). Generation of transgenic rodent malaria parasites by transfection of cell culture-derived merozoites. Malaria journal, 16(1), p. 305. BioMed Central 10.1186/s12936-017-1949-y

Agop Nersesian, Carolina; De Niz Hidalgo, Mariana Isabel; Niklaus, Livia; Prado, Monica; Eickel, Nina; Heussler, Volker (2017). Shedding of host autophagic proteins from the parasitophorous vacuolar membrane of Plasmodium berghei. Scientific Reports, 7(1), p. 2191. Nature Publishing Group 10.1038/s41598-017-02156-7

Maharjan, Niran; Künzli, Christina; Buthey, Kilian; Saxena, Smita (2017). C9ORF72 Regulates Stress Granule Formation and Its Deficiency Impairs Stress Granule Assembly, Hypersensitizing Cells to Stress. Molecular neurobiology, 54(4), pp. 3062-3077. Springer 10.1007/s12035-016-9850-1

Burda, Paul-Christian; Caldelari, Reto; Heussler, Volker (2017). Manipulation of the Host Cell Membrane during Plasmodium Liver Stage Egress. mBio, 8(2) American Society for Microbiology 10.1128/mBio.00139-17

Allen, Sarah Elizabeth; Hug, Iris Sandra; Pabian, Sylwia Weronika; Rzeszutek, Iwona Maria; Höhener, Cristina; Nowacki, Mariusz (2017). Circular Concatemers of Ultra-Short DNA Segments Produce Regulatory RNAs. Cell, 168(6), 990-999.e7. Cell Press 10.1016/j.cell.2017.02.020

Cirovic, Olivera; Trikin, Roman; Hoffmann, Anneliese; Doiron, Nicholas; Jakob, Martin; Ochsenreiter, Torsten (2017). The nuclear RNA binding protein RBP33 influences mRNA and spliced leader RNA abundance in Trypanosoma brucei. Molecular and biochemical parasitology, 212, pp. 16-20. Elsevier 10.1016/j.molbiopara.2016.12.008

Allen, Sarah Elizabeth; Nowacki, Mariusz (2017). Necessity Is the Mother of Invention: Ciliates, Transposons, and Transgenerational Inheritance. Trends in genetics, 33(3), pp. 197-207. Elsevier Current Trends 10.1016/j.tig.2017.01.005

Slabodnick, Mark M; Ruby, J Graham; Reiff, Sarah B; Swart, Estienne Carl; Gosai, Sager; Prabakaran, Sudhakaran; Witkowska, Ewa; Larue, Graham E; Fisher, Susan; Freeman, Robert M; Gunawardena, Jeremy; Chu, William; Stover, Naomi A; Gregory, Brian D; Nowacki, Mariusz; Derisi, Joseph; Roy, Scott William; Marshall, Wallace F; Sood, Pranidhi (2017). The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell. Current Biology, 27(4), pp. 569-575. Cell Press 10.1016/j.cub.2016.12.057

Jost, Daniel; Vaillant, Cédric; Meister, Peter (2017). Coupling 1D modifications and 3D nuclear organization: data, models and function. Current opinion in cell biology, 44, pp. 20-27. Elsevier 10.1016/j.ceb.2016.12.001

Towbin, Benjamin D.; Korem, Yael; Bren, Anat; Doron, Shany; Sorek, Rotem; Alon, Uri (2017). Optimality and sub-optimality in a bacterial growth law. Nature Communications, 8(14123), p. 14123. Springer Nature 10.1038/ncomms14123

Barman-Aksözen, Jasmin; Ćwiek, Paulina; Bansode, Vijay B.; Koentgen, Frank; Trüb, Judith; Pelczar, Pawel; Cinelli, Paolo; Schneider-Yin, Xiaoye; Schümperli, Daniel; Minder, Elisabeth I. (2017). Modeling the ferrochelatase c.315-48C modifier mutation for erythropoietic protoporphyria (EPP) in mice. Disease models & mechanisms, 10(3), pp. 225-233. Company of Biologists Ltd. 10.1242/dmm.027755

Li, Meiling; Lightfoot, Helen Louise; Halloy, Francois; Malinowska, Anna; Berk, Christian; Behera, Alok; Schümperli, Daniel; Hall, Jonathan (2017). Synthesis and cellular activity of stereochemically-pure 2’-O-(2-methoxyethyl)-phosphorothioate oligonucleotides. Chemical communications, 53(3), pp. 541-544. Royal Society of Chemistry 10.1039/C6CC08473G

Hehl, Adrian B.; Faso, Carmen (2017). Response to Zamponi et al. Trends in parasitology, 32(2), p. 76. Elsevier Current Trends 10.1016/j.pt.2016.12.006

De Niz Hidalgo, Mariana Isabel; Burda, Paul-Christian; Kaiser, Gesine; Del Portillo, Hernando A; Spielmann, Tobias; Frischknecht, Freddy; Heussler, Volker (2017). Progress in imaging methods: insights gained into Plasmodium biology. Nature reviews. Microbiology, 15(1), pp. 37-54. Springer Nature 10.1038/nrmicro.2016.158

Vazquez Pianzola, Maria Paula; Schaller, Bogdan; Colombo, Martino; Beuchle, Dirk; Neuenschwander, Samuel; Marcil, Anne; Bruggmann, Rémy; Suter, Beat (2017). The mRNA transportome of the BicD / Egl transport machinery. RNA biology, 14(1), pp. 73-89. Taylor and Francis 10.1080/15476286.2016.1251542

Furrer, Dominique; Swart, Estienne Carl; Kraft, Matthias Fabian; Sandoval, Pamela Yohanna de Lourdes; Nowacki, Mariusz (2017). Two Sets of Piwi Proteins Are Involved in Distinct sRNA Pathways Leading to Elimination of Germline-Specific DNA. Cell reports, 20(2), pp. 505-520. Cell Press 10.1016/j.celrep.2017.06.050

Rashpa, Ravish; Vazquez Pianzola, Maria Paula; Colombo, Martino; Hernandez, Greco; Beuchle, Dirk; Berger, Fabienne Chantal; Peischl, Stephan; Bruggmann, Rémy; Suter, Beat (2017). Cbp80 is needed for the expression of piRNA components and piRNAs. PLoS ONE, 12(7), e0181743. Public Library of Science 10.1371/journal.pone.0181743

Schmuckli, Jacqueline; Reber, Vera; Wacker, Rahel Corina; Bindschedler, Annina; Zakher, Anthony; Heussler, Volker (2017). Inverted recruitment of autophagy proteins to the Plasmodium berghei parasitophorous vacuole membrane. PLoS ONE, 12(8), e0183797. Public Library of Science 10.1371/journal.pone.0183797

Huber, Sandra; Theiler, Romina Sarah; de Quervain, Daniel; Wiens, Olga; Karangenc, Tulin; Heussler, Volker; Dobbelaere, Dirk,; Woods, Kerry (2017). The Microtubule-Stabilizing Protein CLASP1 Associates with the Theileria annulata Schizont Surface via Its Kinetochore-Binding Domain. mSphere, 2(4) American Society for Microbiology 10.1128/mSphere.00215-17

Blum, Yannick; Fritz, Rafael D; Ryu, Hyunryul; Pertz, Olivier (2017). Measuring ERK Activity Dynamics in Single Living Cells Using FRET Biosensors. In: Jimenez, Gerardo (ed.) ERK signaling. Methods in molecular biology: Vol. 1487 (pp. 203-221). Springer 10.1007/978-1-4939-6424-6_15

Hastings, Janna; Mains, Abraham; Artal-Sanz, Marta; Bergmann, Sven; Braeckman, Bart P.; Bundy, Jake; Cabreiro, Filipe; Dobson, Paul; Ebert, Paul; Hattwell, Jake; Hefzi, Hooman; Houtkooper, Riekelt H.; Jelier, Rob; Joshi, Chintan; Kothamachu, Varun B.; Lewis, Nathan; Lourenço, Artur Bastos; Nie, Yu; Norvaisas, Povilas; Pearce, Juliette; ... (2017). WormJam: A consensus C. elegans Metabolic Reconstruction and Metabolomics Community and Workshop Series. Worm, 6(2), e1373939. Taylor & Francis 10.1080/21624054.2017.1373939

2016

Heussler, Volker; Rennenberg, Annika; Limenitakis Stanway, Rebecca (2016). Exoerythrocytic development of Plasmodium parasites. In: Gaur, Deepak; Chitnis, Chetan E.; Chauhan, Virander S. (eds.) Advances in Malaria research. Series on Biochemistry and Molecular Biology (pp. 9-32). Hoboken, New Jersey: Wiley & Sons, Inc.

Heussler, Volker; Spielmann, Tobias; Frischknecht, Friedrich; Gillberger, Tim (2016). Plasmodium. In: Walochnik, Julia; Duchêne, Michael (eds.) Molecular Parasitology (pp. 241-284). Wien: Springer-Verlag Wien 10.1007/978-3-7091-1416-2_9

Rout, Samuel; Zumthor, Jon Paulin; Schraner, Elisabeth M; Faso, Carmen; Hehl, Adrian B (2016). An Interactome-Centered Protein Discovery Approach Reveals Novel Components Involved in Mitosome Function and Homeostasis in Giardia lamblia. PLoS pathogens, 12(12), e1006036. Public Library of Science 10.1371/journal.ppat.1006036

Jakob, Martin; Hoffmann, Anneliese; Amodeo, Simona; Peitsch, Camille; Zuber, Benoît; Ochsenreiter, Torsten (2016). Mitochondrial growth during the cell cycle of Trypanosoma brucei bloodstream forms. Scientific Reports, 6(36565), p. 36565. Nature Publishing Group 10.1038/srep36565

Odermatt, Philipp; Trüb, Judith; Furrer, Lavinia; Fricker, Roger; Marti, Andreas; Schümperli, Daniel (2016). Somatic therapy of a mouse SMA model with a U7 snRNA gene correcting SMN2 splicing. Molecular therapy, 24(10), pp. 1797-1805. Nature Publishing Group 10.1038/mt.2016.152

Kaiser, Gesine; De Niz Hidalgo, Mariana Isabel; Zuber, Benoît; Burda, Paul-Christian; Kornmann, Benoît; Limenitakis Stanway, Rebecca; Heussler, Volker (2016). High resolution microscopy reveals an unusual architecture of the Plasmodium berghei endoplasmic reticulum. Molecular microbiology, 102(5), pp. 775-791. Blackwell Science 10.1111/mmi.13490

Vazquez Pianzola, Maria Paula; Suter, Beat; Hernández, Greco (2016). Evolution of the Molecules Coupling mRNA Transport with Translational Control in Metazoans. In: Hernández, Greco; Jagus, Rosemary (eds.) Evolution of the Protein Synthesis Machinery and Its Regulation (pp. 531-546). Springer 10.1007/978-3-319-39468-8_21

Hoffmann, Anneliese; Jakob, Martin; Ochsenreiter, Torsten (2016). A novel component of the mitochondrial genome segregation machinery in trypanosomes. Microbial cell, 3(8), pp. 352-354. Shared Science Publishers OG 10.15698/mic2016.08.519

Swart, Estienne Carl; Serra, Valentina; Petroni, Giulio; Nowacki, Mariusz (2016). Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination. Cell, 166(3), pp. 691-702. Cell Press 10.1016/j.cell.2016.06.020

Nölke, Thilo; Schwan, Carsten; Lehmann, Friederike; Østevold, Kristine; Pertz, Olivier; Aktories, Klaus (2016). Septins guide microtubule protrusions induced by actin-depolymerizing toxins like Clostridium difficile transferase (CDT). Proceedings of the National Academy of Sciences of the United States of America - PNAS, 113(28), pp. 7870-7875. National Academy of Sciences NAS 10.1073/pnas.1522717113

Stucki, David; Ruegsegger, Céline; Steiner, Silvio; Radecke, Julika; Murphy, MP; Zuber, Benoît; Saxena, Smita (2016). Mitochondrial impairments contribute to Spinocerebellar ataxia type 1 progression and can be ameliorated by the mitochondria-targeted antioxidant MitoQ. Free radical biology & medicine, 97, pp. 427-440. Elsevier 0.1016/j.freeradbiomed.2016.07.005

Trikin, Roman; Doiron, Nicholas; Hoffmann, Anneliese; Haenni, Beat; Jakob, Martin; Schnaufer, Achim; Schimanski, Bernd; Zuber, Benoît; Ochsenreiter, Torsten (2016). Correction: TAC102 Is a Novel Component of the Mitochondrial Genome Segregation Machinery in Trypanosomes. PLoS pathogens, 12(7), e1005750. Public Library of Science 10.1371/journal.ppat.1005750

Zumthor, Jon Paulin; Cernikova, Lenka; Rout, Samuel; Kaech, Andres; Faso, Carmen; Hehl, Adrian B (2016). Static Clathrin Assemblies at the Peripheral Vacuole-Plasma Membrane Interface of the Parasitic Protozoan Giardia lamblia. PLoS pathogens, 12(7), e1005756. Public Library of Science 10.1371/journal.ppat.1005756

Bracht, John R; Wang, Xing; Shetty, Keerthi; Chen, Xiao; Uttarotai, Grace J; Callihan, Evan C; McCloud, Sierra S; Clay, Derek M; Wang, Jingmei; Nowacki, Mariusz; Landweber, Laura F (2016). Chromosome fusions triggered by noncoding RNA. RNA biology, 14(5), pp. 620-631. Landes Bioscience 10.1080/15476286.2016.1195940

Roditi, Isabel (2016). The languages of parasite communication. Molecular and biochemical parasitology, 208(1), pp. 16-22. Elsevier 10.1016/j.molbiopara.2016.05.008

Trikin, Roman; Doiron, Nicholas; Hoffmann, Anneliese; Haenni, Beat; Jakob, Martin; Schnaufer, Achim; Schimanski, Bernd; Zuber, Benoît; Ochsenreiter, Torsten (2016). TAC102 Is a Novel Component of the Mitochondrial Genome Segregation Machinery in Trypanosomes. PLoS pathogens, 12(5), e1005586. Public Library of Science 10.1371/journal.ppat.1005586

Roditi, Isabel; Schumann-Burkard, Gabriela; Naguleswaran, Arunasalam (2016). Environmental sensing by African trypanosomes. Current opinion in microbiology, 32, pp. 26-30. Current Biology Ltd. 10.1016/j.mib.2016.04.011

Bren, Anat; Park, Junyoung O; Towbin, Benjamin D.; Dekel, Erez; Rabinowitz, Joshua D; Alon, Uri (2016). Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP. Scientific Reports, 6, p. 24834. Nature Publishing Group 10.1038/srep24834

Imhof, Simon; Fragoso, Cristina; Hemphill, Andrew; Von Schubert, Conrad; Li, Dong; Legant, Wesley; Betzig, Erik; Roditi, Isabel (2016). Flagellar membrane fusion and protein exchange in trypanosomes; a new form of cell-cell communication? F1000Research, 5(682), p. 682. F1000 Research Ltd 10.12688/f1000research.8249.1

Murakami, Kazuma; Yurgel, Maria E; Stahl, Bethany A; Masek, Pavel; Mehta, Aradhana; Heidker, Rebecca; Bollinger, Wesley; Gingras, Robert M; Kim, Young-Joon; Williams, Jack; Suter, Beat; DiAngelo, Justin R; Keene, Alex C (2016). translin Is Required for Metabolic Regulation of Sleep. Current Biology, 26(7), pp. 972-980. Cell Press 10.1016/j.cub.2016.02.013

Ruegsegger, Céline; Saxena, Smita (2016). Proteostasis impairment in ALS. Brain research, 1648(Pt B), pp. 571-579. Elsevier 10.1016/j.brainres.2016.03.032

Börner, Kenneth; Jain, Dhawal; Vazquez Pianzola, Maria Paula; Vengadasalam, Sandra; Steffen, Natascha; Fyodorov, Dmitry V; Tomancak, Pavel; Konev, Alexander; Suter, Beat; Becker, Peter B (2016). A role for tuned levels of nucleosome remodeler subunit ACF1 during Drosophila oogenesis. Developmental biology, 411(2), pp. 217-230. Elsevier 10.1016/j.ydbio.2016.01.039

Maharjan, Niran; Saxena, Smita (2016). ER strikes again: Proteostasis Dysfunction In ALS. EMBO journal, 35(8), pp. 798-800. Nature Publishing Group 10.15252/embj.201694117

Wenzler, Tanja; Schumann-Burkard, Gabriela; Schmidt, Remo S.; Mäser, Pascal; Bergner, Andreas; Roditi, Isabel; Brun, Reto (2016). A new approach to chemotherapy: drug-induced differentiation kills African trypanosomes. Scientific Reports, 6(22451), p. 22451. Nature Publishing Group 10.1038/srep22451

Ruegsegger, Céline; Maharjan, Niran; Goswami, Anand; Filézac de l’Etang, Audrey; Weis, Joachim; Troost, Dirk; Heller, Manfred; Gut, Heinz; Saxena, Smita (2016). Aberrant association of misfolded SOD1 with Na+/K+ATPase-α3 impairs its activity and contributes to motor neuron vulnerability in ALS. Acta neuropathologica, 131(3), pp. 427-451. Springer 10.1007/s00401-015-1510-4

Schümperli, Daniel (2016). Rudolf Weber (1922-2015): a driving force in the transition of developmental biology into a molecular and cellular science. Development genes and evolution, 226(2), pp. 65-67. Springer 10.1007/s00427-016-0532-9

Romeo, Valentina; Schümperli, Daniel (2016). Cycling in the nucleus: regulation of RNA 3' processing and nuclear organization of replication-dependent histone genes. Current opinion in cell biology, 40, pp. 23-31. Elsevier 10.1016/j.ceb.2016.01.015

Kudira, Ramesh; Malinka, Thomas; Kohler, Andreas; Dosch, Michel; Gomez de Agüero Tamargo, Maria de la Mercedes; Melin, Nicolas; Haegele, S; Starlinger, P; Maharjan, Niran; Saxena, Smita; Keogh, Adrian; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (2016). P2X1 regulated IL-22 secretion by innate lymphoid cells is required for efficient liver regeneration. Hepatology, 63(6), pp. 2004-2017. Wiley Interscience 10.1002/hep.28492

Grabliauskaite, Kamile; Saponara, Enrica; Reding, Theresia; Bombardo, Marta; Seleznik, Gitta M.; Malagola, Ermanno; Zabel, Anja; Faso, Carmen; Sonda, Sabrina; Graf, Rolf (2016). Inactivation of TGFβ receptor II signalling in pancreatic epithelial cells promotes acinar cell proliferation, acinar-to-ductal metaplasia and fibrosis during pancreatitis. Journal of pathology, 238(3), pp. 434-445. Wiley 10.1002/path.4666

Ruegsegger, Céline; Stucki, David; Steiner, Silvio; Angliker, Nico; Radecke, Julika; Keller, Eva; Zuber, Benoît; Rüegg, Markus A; Saxena, Smita (2016). Impaired mTORC1-Dependent Expression of Homer-3 Influences SCA1 Pathophysiology. Neuron, 89(1), pp. 129-146. Cell Press 10.1016/j.neuron.2015.11.033

Fusco, Ludovico; Lefort, Riwal; Smith, Kevin; Benmansour, Fethallah; Gonzalez, German; Barillari, Caterina; Rinn, Bernd; Fleuret, Francois; Fua, Pascal; Pertz, Olivier (2016). Computer vision profiling of neurite outgrowth dynamics reveals spatiotemporal modularity of Rho GTPase signaling. Journal of cell biology, 212(1), pp. 91-111. Rockefeller Institute Press 10.1083/jcb.201506018

Neve, Anuja Vilas; Trüb, Judith; Saxena, Smita; Schümperli, Daniel (2016). Central and peripheral defects in motor units of the diaphragm of spinal muscular atrophy mice. Molecular and cellular neuroscience, 70, pp. 30-41. Elsevier 10.1016/j.mcn.2015.11.007

De Niz Hidalgo, Mariana Isabel; Limenitakis Stanway, Rebecca; Wacker, Rahel Corina; Keller, Derya; Heussler, Volker T. (2016). An ultrasensitive NanoLuc-based luminescence system for monitoring Plasmodium berghei throughout its life cycle. Malaria journal, 15(1), p. 232. BioMed Central 10.1186/s12936-016-1291-9

Martin, Katrin; Reimann, Andreas; Fritz, Rafael D; Ryu, Hyunryul; Jeon, Noo Li; Pertz, Olivier (2016). Spatio-temporal co-ordination of RhoA, Rac1 and Cdc42 activation during prototypical edge protrusion and retraction dynamics. Scientific Reports, 6, p. 21901. Nature Publishing Group 10.1038/srep21901

Moreno, Eduardo; Levayer, Romain (2016). How to be in a good shape? The influence of clone morphology on cell competition. Communicative & integrative biology, 9(1), e1102806. Landes Bioscience 10.1080/19420889.2015.1102806

Moreno, Eduardo; Levayer, Romain; Dupont, Carole (2016). Tissue Crowding Induces Caspase-Dependent Competition for Space. Current Biology, 26(5), pp. 670-677. Cell Press 10.1016/j.cub.2015.12.072

De Niz Hidalgo, Mariana Isabel; Ullrich, Ann-Katrin; Heiber, Arlett; Blancke Soares, Alexandra; Pick, Christian; Lyck, Ruth; Keller, Derya; Kaiser, Gesine; Prado, Monica; Flemming, Sven; Del Portillo, Hernando; Janse, Chris J; Heussler, Volker; Spielmann, Tobias (2016). The machinery underlying malaria parasite virulence is conserved between rodent and human malaria parasites. Nature communications, 7, p. 11659. Nature Publishing Group 10.1038/ncomms11659

Kumar, Hirdesh; Sattler, Julia Magdalena; Singer, Mirko; Heiss, Kirsten; Reinig, Miriam; Hammerschmidt-Kamper, Christiane; Heussler, Volker; Mueller, Ann-Kristin; Frischknecht, Friedrich (2016). Protective efficacy and safety of liver stage attenuated malaria parasites. Scientific Reports, 6, p. 26824. Nature Publishing Group 10.1038/srep26824

Nowacki, Mariusz; Witzany, Guenther (eds.) (2016). Biocommunication of Ciliates. Cham: Springer 10.1007/978-3-319-32211-7

Allen, Sarah Elizabeth; Nowacki, Mariusz (2016). RNA-Guided Genome Editing. In: Witzany, Guenther; Nowacki, Mariusz (eds.) Biocommunication of Ciliates (pp. 35-50). Cham: Springer 10.1007/978-3-319-32211-7_3

Fritz, Rafael Dominik; Pertz, Olivier (2016). The dynamics of spatio-temporal Rho GTPase signaling: formation of signaling patterns. F1000Research, 5(749) F1000 Research Ltd 10.12688/f1000research.7370.1

Kudira, Ramesh; Malinka, Thomas; Kohler, Andreas; Dosch, Michel; Gomez de Agüero Tamargo, Maria de la Mercedes; Melin, Nicolas; Haegele, S; Starlinger, P; Maharjan, Niran; Saxena, Smita; Keogh, Adrian; Keogh-Stroka, Deborah M.; Candinas, Daniel; Beldi, Guido (2016). P2X1 regulated IL-22 secretion by innate lymphoid cells is required for efficient liver regeneration (Unpublished). In: Keystone Symposium. Vancouver. 29.01.2016.

Ebneter, Jacqueline A.; Heusser, Sally D.; Schraner, Elisabeth M.; Hehl, Adrian B.; Faso, Carmen (2016). Cyst-Wall-Protein-1 is fundamental for Golgi-like organelle neogenesis and cyst-wall biosynthesis in Giardia lamblia. Nature communications, 7(13859), p. 13859. Nature Publishing Group 10.1038/ncomms13859

2015

Gonzalez-Sandoval, Adriana; Towbin, Benjamin D; Kalck, Veronique; Cabianca, Daphne S; Gaidatzis, Dimos; Hauer, Michael H; Geng, Liqing; Wang, Li; Yang, Teddy; Wang, Xinghao; Zhao, Kehao; Gasser, Susan M (2015). Perinuclear Anchoring of H3K9-Methylated Chromatin Stabilizes Induced Cell Fate in C. elegans Embryos. Cell reports, 163(6), pp. 1333-1347. Cell Press 10.1016/j.cell.2015.10.066

Ryu, Hyunryul; Chung, Minhwan; Dobrzyński, Maciej; Fey, Dirk; Blum, Yannick; Lee, Sung Sik; Peter, Matthias; Kholodenko, Boris N; Jeon, Noo Li; Pertz, Olivier (2015). Frequency modulation of ERK activation dynamics rewires cell fate. Molecular systems biology, 11(11), p. 838. EMBO Press 10.15252/msb.20156458

Fritz, Rafael Dominik; Menshykau, Denis; Martin, Katrin; Reimann, Andreas; Pontelli, Valeria; Pertz, Olivier (2015). SrGAP2-Dependent Integration of Membrane Geometry and Slit-Robo-Repulsive Cues Regulates Fibroblast Contact Inhibition of Locomotion. Developmental cell, 35(1), pp. 78-92. Cell Press 10.1016/j.devcel.2015.09.002

Imhof, Simon; Roditi, Isabel (2015). The Social Life of African Trypanosomes. Trends in parasitology, 31(10), pp. 490-498. Elsevier Current Trends 10.1016/j.pt.2015.06.012

Vanwalleghem, G; Fontaine, F; Lecordier, L; Tebabi, P; Klewe, K; Nolan, DP; Yamaryo-Botté, Y; Botté, C; Schumann-Burkard, Gabriela; Rassow, J; Roditi, Isabel; Perez-Morga, D; Pays, E (2015). Coupling of lysosomal and mitochondrial membrane permeabilization in trypanolysis by APOL1. Nature communications, 6(8078), p. 8078. Nature Publishing Group 10.1038/ncomms9078

Prado, Monica; Eickel, Nina; De Niz Hidalgo, Mariana Isabel; Heitmann, Anna; Agop Nersesian, Carolina; Wacker, Rahel Corina; Schmuckli-Maurer, Jacqueline; Caldelari, Reto; Janse, Chris J; Khan, Shahid M; May, Jürgen; Meyer, Christian G; Heussler, Volker (2015). Long-term live imaging reveals cytosolic immune responses of host hepatocytes against Plasmodium infection and parasite escape mechanisms. Autophagy, 11(9), pp. 1561-1579. Landes Bioscience 10.1080/15548627.2015.1067361

Moretti, Francesca; Rolando, Chiara; Winker, Moritz; Ivanek, Robert; Rodriguez, Javier; Von Kriegsheim, Alex; Taylor, Verdon; Bustin, Michael; Pertz, Olivier (2015). Growth Cone Localization of the mRNA Encoding the Chromatin Regulator HMGN5 Modulates Neurite Outgrowth. Molecular and cellular biology, 35(11), pp. 2035-2050. American Society for Microbiology 10.1128/MCB.00133-15

Yusuf, Noor A; Green, Judith L; Wall, Richard J; Knuepfer, Ellen; Moon, Robert W; Schulte-Huxel, Christina; Limenitakis Stanway, Rebecca; Martin, Stephen R; Howell, Steven A; Douse, Christopher H; Cota, Ernesto; Tate, Edward W; Tewari, Rita; Holder, Anthony A (2015). The Plasmodium Class XIV Myosin, MyoB, Has a Distinct Subcellular Location in Invasive and Motile Stages of the Malaria Parasite and an Unusual Light Chain. Journal of biological chemistry, 290(19), pp. 12147-12164. American Society for Biochemistry and Molecular Biology 10.1074/jbc.M115.637694

de Macêdo, Juan P.; Schumann-Burkard, Gabriela; Niemann, Moritz; Barrett, Michael P.; Vial, Henri; Mäser, Pascal; Roditi, Isabel; Schneider, André; Bütikofer, Peter; Horn, David (2015). An Atypical Mitochondrial Carrier That Mediates Drug Action in Trypanosoma brucei. PLoS pathogens, 11(5), e1004875. Public Library of Science 10.1371/journal.ppat.1004875

Swart, Estienne Carl; Nowacki, Mariusz (2015). The eukaryotic way to defend and edit genomes by sRNA-targeted DNA deletion. Annals of the New York Academy of Sciences, 1341, pp. 106-114. Blackwell 10.1111/nyas.12636

Andrieu, Thomas; Mani, Orlando; Göpfert, Christine; Bertolini, Reto; Güttinger, Andreas; Setoud, Raschid; Uh, Kayla Y; Baker, Michael E; Frey, Felix J; Frey, Brigitte M (2015). Detection and functional portrayal of a novel class of dihydrotestosterone derived selective progesterone receptor modulators (SPRM). Journal of steroid biochemistry and molecular biology, 147, pp. 111-123. Elsevier 10.1016/j.jsbmb.2014.12.009

Duque, Sandra I; Arnold, W David; Odermatt, Philipp; Li, Xiaohui; Porensky, Paul N; Schmelzer, Leah; Meyer, Kathrin; Kolb, Stephen J; Schümperli, Daniel; Kaspar, Brian K; Burghes, Arthur H M (2015). A large animal model of spinal muscular atrophy and correction of phenotype. Annals of neurology, 77(3), pp. 399-414. Wiley-Blackwell 10.1002/ana.24332

Burda, Paul-Christian; Rölli, Matthias; Schaffner, Marco; Khan, Shahid M; Janse, Chris J; Heussler, Volker (2015). A Plasmodium phospholipase is involved in disruption of the liver stage parasitophorous vacuole membrane. PLoS pathogens, 11(3), e1004760. Public Library of Science 10.1371/journal.ppat.1004760

Ziegler, Thomas; Rausch, Sebastian; Steinfelder, Svenja; Klotz, Christian; Hepworth, Matthew R; Kühl, Anja A; Burda, Paul-Christian; Lucius, Richard; Hartmann, Susanne (2015). A novel regulatory macrophage induced by a helminth molecule instructs IL-10 in CD4+ T cells and protects against mucosal inflammation. Journal of immunology, 194(4), pp. 1555-1564. American Association of Immunologists 10.4049/jimmunol.1401217

Filézac de L'Etang, Audrey; Maharjan, Niran; Cordeiro Braña, Marisa; Ruegsegger, Céline; Rehmann, Ruth; Goswami, Anand; Roos, Andreas; Troost, Dirk; Schneider, Bernard L; Weis, Joachim; Saxena, Smita (2015). Marinesco-Sjögren syndrome protein SIL1 regulates motor neuron subtype-selective ER stress in ALS. Nature neuroscience, 18(2), pp. 227-238. Nature America 10.1038/nn.3903

Stettler, Karin; Li, Xiaoming; Sandrock, Björn; Braga, Sophie Marie-Pierre; Heller, Manfred; Dümbgen, Lutz; Suter, Beat (2015). A Drosophila XPD model links cell cycle coordination with neuro-development and suggests links to cancer. Disease models & mechanisms, 8(1), pp. 81-91. Company of Biologists Ltd. 10.1242/dmm.016907

De Niz, Mariana; Helm, Susanne; Horstmann, Sebastian; Annoura, Takeshi; Del Portillo, Hernando A; Khan, Shahid M; Heussler, Volker (2015). In vivo and in vitro characterization of a Plasmodium liver stage-specific promoter. PLoS ONE, 10(4), e0123473. Public Library of Science 10.1371/journal.pone.0123473

Naguleswaran, Arunasalam; Gunasekera, Kapila; Schimanski, Bernd; Heller, Manfred; Hemphill, Andrew; Ochsenreiter, Torsten; Roditi, Isabel (2015). Trypanosoma brucei RRM1 is a nuclear RNA-binding protein and modulator of chromatin structure. mBio, 6(2), e00114. American Society for Microbiology 10.1128/mBio.00114-15

Imhof, Simon; Vu Nguyen, Xuan Lan; Bütikofer, Peter; Roditi, Isabel (2015). A glycosylation mutant of Trypanosoma brucei links social motility defects in vitro to impaired colonisation of tsetse in vivo. Eukaryotic cell, 14(6), pp. 588-592. American Society for Microbiology ASM 10.1128/EC.00023-15

Bühlmann, M; Walrad, Pegine; Rico, E; Ivens, A; Capewell, P; Naguleswaran, Arunasalam; Roditi, Isabel; Matthews, K (2015). NMD3 regulates both mRNA and rRNA nuclear export in African trypanosomes via an XPOI-linked pathway. Nucleic acids research, 43(9), pp. 4491-4504. Oxford University Press 10.1093/nar/gkv330

Saddler, Adam; Burda, Paul-Christian; Koella, Jacob C (2015). Resisting infection by Plasmodium berghei increases the sensitivity of the malaria vector Anopheles gambiae to DDT. Malaria journal, 14, p. 134. BioMed Central 10.1186/s12936-015-0646-y

Raczynska, Katarzyna Dorota; Ruepp, Marc-David; Brzek, Aleksandra; Reber, Stefan; Romeo, Valentina; Rindlisbacher, Barbara; Heller, Manfred; Szweykowska-Kulinska, Zofia; Jarmolowski, Artur; Schümperli, Daniel (2015). FUS/TLS contributes to replication-dependent histone gene expression by interaction with U7 snRNPs and histone-specific transcription factors. Nucleic acids research, 43(20), pp. 9711-9728. Oxford University Press 10.1093/nar/gkv794

Lu, Jiongming; Marygold, Steven J; Gharib, Walid H; Suter, Beat (2015). The aminoacyl-tRNA synthetases of Drosophila melanogaster. Fly, 9(2), pp. 53-61. Taylor & Francis 10.1080/19336934.2015.1101196

Moreno, Eduardo; Gogna, Rajan; Shee, Kevin (2015). Cell Competition During Growth and Regeneration. Annual Review of Genetics, 49, pp. 697-718. Annual Reviews 10.1146/annurev-genet-112414-055214

Moreno, Eduardo; Casas-Tintó, S; Lolo, FN (2015). Active JNK-dependent secretion of Drosophila Tyrosyl-tRNA synthetase by loser cells recruits haemocytes during cell competition. Nature communications, 6(10022), pp. 1-12. Nature Publishing Group 10.1038/ncomms10022

Moreno, Eduardo; Hauert, Barbara; Levayer, Romain (2015). Cell mixing induced by myc is required for competitive tissue invasion and destruction. Nature, 524(7566), pp. 476-480. Macmillan Journals Ltd. 10.1038/nature14684

Moreno, Eduardo; Zhang, C; Casas-Tintó, S; Li, G; Lin, N; Chung, M; Moberg, K H; Zhou, L (2015). An Intergenic Regulatory Region Mediates Drosophila Myc -Induced Apoptosis and Blocks Tissue Hyperplasia. Oncogene, 34(18), pp. 2385-2397. Nature Publishing Group 10.1038/onc.2014.160

2014

Aidelberg, Guy; Towbin, Benjamin D; Rothschild, Daphna; Dekel, Erez; Bren, Anat; Alon, Uri (2014). Hierarchy of non-glucose sugars in Escherichia coli. BMC systems biology, 8(133), p. 133. BioMed Central 10.1186/s12918-014-0133-z

Sharma, Rahul; Jost, Daniel; Kind, Jop; Gómez-Saldivar, Georgina; van Steensel, Bas; Askjaer, Peter; Vaillant, Cédric; Meister, Pierre (2014). Differential spatial and structural organization of the X chromosome underlies dosage compensation in C. elegans. Genes & development, 28(23), pp. 2591-2596. Cold Spring Harbor Laboratory Press 10.1101/gad.248864.114

Romeo, Valentina; Griesbach, Esther; Schümperli, Daniel (2014). CstF64: cell cycle regulation and functional role in 3' end processing of replication-dependent histone mRNAs. Molecular and cellular biology, 34(23), pp. 4272-4284. American Society for Microbiology 10.1128/MCB.00791-14

Moreno, Eduardo; Rhiner, Christa (2014). Darwin's multicellularity: from neurotrophic theories and cell competition to fitness fingerprints. Current opinion in cell biology, 31, pp. 16-22. Elsevier 10.1016/j.ceb.2014.06.011

Lu, Jiongming; Bergert, Martin; Walther, Anita; Suter, Beat (2014). Double-sieving-defective aminoacyl-tRNA synthetase causes protein mistranslation and affects cellular physiology and development. Nature communications, 5(5650), pp. 1-13. Nature Publishing Group 10.1038/ncomms6650

Ignarski, Michael; Singh, Aditi; Swart, Estienne Carl; Arambasic, Miroslav; Sandoval, Pamela Yohanna de Lourdes; Nowacki, Mariusz (2014). Paramecium tetraurelia chromatin assembly factor-1-like protein PtCAF-1 is involved in RNA-mediated control of DNA elimination. Nucleic acids research, 42(19), pp. 11952-11964. Information Retrieval Ltd. 10.1093/nar/gku874

Bou Dib, Peter; Gnägi, Bettina; Daly, Fiona; Sabado, Virginie; Tas, Damla; Glauser, Dominique A; Meister, Pierre; Nagoshi, Emi (2014). A conserved role for p48 homologs in protecting dopaminergic neurons from oxidative stress. PLoS genetics, 10(10), e1004718. Public Library of Science 10.1371/journal.pgen.1004718

Martin, Katrin; Vilela, Marco; Jeon, Noo Li; Danuser, Gaudenz; Pertz, Olivier (2014). A growth factor-induced, spatially organizing cytoskeletal module enables rapid and persistent fibroblast migration. Developmental cell, 30(6), pp. 701-716. Cell Press 10.1016/j.devcel.2014.07.022

Lehmann, Christine; Heitmann, Anna; Mishra, Satish; Burda, Paul-Christian; Singer, Mirko; Prado, Monica; Niklaus, Livia; Lacroix, Céline; Ménard, Robert; Frischknecht, Friedrich; Stanway, Rebecca; Sinnis, Photini; Heussler, Volker (2014). A cysteine protease inhibitor of plasmodium berghei is essential for exo-erythrocytic development. PLoS pathogens, 10(8), e1004336. Public Library of Science 10.1371/journal.ppat.1004336

Mathieu, Christoph; González Salgado, Amaia; Wirdnam, Corina; Meier, Stefan; Suter, Marianne; Inbar, Ehud; Mäser, Pascal; Zilberstein, Dan; Sigel, Erwin; Bütikofer, Peter; Rentsch, Doris (2014). Trypanosoma brucei eflornithine transporter AAT6 is a low-affinity low-selective transporter for neutral amino acids. Biochemical journal, 463(1), pp. 9-18. Portland Press 10.1042/BJ20140719

Dolde, Christine; Lu, Jiongming; Suter, Beat (2014). Cross talk between cellular regulatory networks mediated by shared proteins. Advances in Biology, 2014, pp. 1-12. Hindawi Publishing Corporation 10.1155/2014/274196

Voigt, Tilman; Neve, Anuja Vilas; Schümperli, Daniel (2014). The craniosacral progression of muscle development influences the emergence of neuromuscular junction alterations in a severe murine model for spinal muscular atrophy. Neuropathology and Applied Neurobiology, 40(4), pp. 416-434. Wiley 10.1111/nan.12064

Fügi, Matthias A; Gunasekera, Kapila; Ochsenreiter, Torsten; Guan, Xueli; Wenk, Markus R; Mäser, Pascal (2014). Genome profiling of sterol synthesis shows convergent evolution in parasites and guides chemotherapeutic attack. Journal of lipid research, 55(5), pp. 929-938. American Society for Biochemistry and Molecular Biology ASBMB 10.1194/jlr.M048017

Schnarwiler, Felix; Niemann, Moritz; Doiron, Nicholas; Harsman, Anke Judith; Käser, Sandro; Mani, Jan; Chanfon, Astrid; Dewar, C. E.; Oeljeklaus, S.; Jackson, Christopher; Pusnik, M.; Schmidt, O.; Meisinger, C.; Hiller, S.; Warscheid, B.; Schnaufer, A. C.; Ochsenreiter, Torsten; Schneider, André (2014). Trypanosomal TAC40 constitutes a novel subclass of mitochondrial -barrel proteins specialized in mitochondrial genome inheritance. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 111(21), pp. 7624-7629. National Academy of Sciences NAS 10.1073/pnas.1404854111

Vazquez Pianzola, Maria Paula; Adam, Jacqueline; Haldemann, Dominique; Hain, Daniel; Suter, Beat; Urlaub, Henning (2014). Clathrin heavy chain plays multiple roles in polarizing the Drosophila oocyte downstream of Bic-D. Development, 141(9), pp. 1915-1926. Company of Biologists Limited 10.1242/dev.099432

Gupta, Kartik; Madan, Esha; Sayyid, Muzzammil; Arias-Pulido, Hugo; Moreno, Eduardo; Kuppusamy, Periannan; Gogna, Rajan (2014). Oxygen regulates molecular mechanisms of cancer progression and metastasis. Cancer and Metastasis Reviews, 33(1), pp. 183-215. Springer 10.1007/s10555-013-9464-2

Körner Jachertz, Meike; Waser, Beatrice; Rehmann, Ruth; Reubi, Jean-Claude (2014). Early over-expression of GRP receptors in prostatic carcinogenesis. Prostate, 74(2), pp. 217-224. Wiley-Blackwell 10.1002/pros.22743

Ferrer, Mireia; Martin-Jaular, Lorena; De Niz Hidalgo, Mariana Isabel; Khan, Shahid M; Janse, Chris J; Calvo, Maria; Heussler, Volker; del Portillo, Hernando A (2014). Imaging of the spleen in malaria. Parasitology international, 63(1), pp. 195-205. Elsevier 10.1016/j.parint.2013.08.014

Sandoval, Pamela Yohanna de Lourdes; Swart, Estienne Carl; Arambasic, Miroslav; Nowacki, Mariusz (2014). Functional Diversification of Dicer-like Proteins and Small RNAs Required for Genome Sculpting. Developmental cell, 28(2), pp. 174-188. Cell Press 10.1016/j.devcel.2013.12.010

Aeschlimann, Samuel H.; Jönsson, Franziska; Postberg, Jan; Stover, Nicholas A.; Petera, Robert L.; Lipps, Hans-Joachim; Nowacki, Mariusz; Swart, Estienne Carl (2014). The Draft Assembly of the Radically Organized Stylonychia lemnae Macronuclear Genome. Genome biology and evolution, 6(7), pp. 1707-1723. Oxford University Press 10.1093/gbe/evu139

Swart, Estienne Carl; Wilkes, Cyril Denby; Sandoval, Pamela Yohanna de Lourdes; Arambasic, Miroslav; Sperling, Linda; Nowacki, Mariusz (2014). Genome-wide analysis of genetic and epigenetic control of programmed DNA deletion. Nucleic acids research, 42(14), pp. 8970-8983. Oxford University Press 10.1093/nar/gku619

Almouzni, Geneviève; Altucci, Lucia; Amati, Bruno; Ashley, Neil; Baulcombe, David; Beaujean, Nathalie; Bock, Christoph; Bongcam-Rudloff, Erik; Bousquet, Jean; Braun, Sigurd; Paillerets, Brigitte Bressac-de; Bussemakers, Marion; Clarke, Laura; Conesa, Ana; Estivill, Xavier; Fazeli, Alireza; Grgurević, NeŽa; Gut, Ivo; Heijmans, Bastiaan T; Hermouet, Sylvie; ... (2014). Relationship between genome and epigenome - challenges and requirements for future research BioMed Central 10.1186/1471-2164-15-487

Wiens, Olga; Xia, Dong; Von Schubert, Conrad; Wastling, Jonathan M; Dobbelaere, Dirk,; Heussler, Volker; Woods, Kerry (2014). Cell cycle-dependent phosphorylation of Theileria annulata schizont surface proteins. PLoS ONE, 9(7), e103821. Public Library of Science 10.1371/journal.pone.0103821

Huo, Qing; Kayikci, Melis; Odermatt, Philipp; Meyer, Kathrin; Michels, Olivia; Saxena, Smita; Ule, Jernej; Schümperli, Daniel (2014). Splicing changes in SMA mouse motoneurons and SMN-depleted neuroblastoma cells: evidence for involvement of splicing regulatory proteins. RNA biology, 11(11), pp. 1430-1446. Landes Bioscience 10.1080/15476286.2014.996494

Askjaer, Peter; Galy, Vincent; Meister, Peter (2014). Modern tools to study nuclear pore complexes and nucleocytoplasmic transport in Caenorhabditis elegans. Methods in cell biology, 122, pp. 277-310. Academic Press 10.1016/B978-0-12-417160-2.00013-8

Askjaer, Peter; Ercan, Sevinç; Meister, Peter (2014). Modern techniques for the analysis of chromatin and nuclear organization in C. elegans. WormBook : the online review of C. elegans biology, pp. 1-35. wormbook.org. 10.1895/wormbook.1.169.1

Cristodero, Marina; Schimanski, Bernd; Heller, Manfred; Roditi, Isabel (2014). Functional characterization of the trypanosome translational repressor SCD6. Biochemical journal, 457(1), pp. 57-67. Portland Press 10.1042/BJ20130747

Lecordier, Laurence; Uzureau, P; Tebabi, P; Perez-Morga, D; Nolan, D; Schumann-Burkard, Gabriela; Roditi, Isabel; Pays, E (2014). Identification of Trypanosoma brucei components involved in trypanolysis by normal human serum. Molecular microbiology, 94(3), pp. 625-636. Blackwell Science 10.1111/mmi.12783

Imhof, Simon; Knüsel, Sebastian; Gunasekera, Kapila; Vu Nguyen, Xuan Lan; Roditi, Isabel (2014). Social motility of African trypanosomes is a property of a distinct life-cycle stage that occurs early in tsetse fly transmission. PLoS pathogens, 10(10), e1004493. Public Library of Science 10.1371/journal.ppat.1004493

Arambasic, Miroslav; Sandoval, Pamela Yohanna de Lourdes; Höhener, Cristina; Singh, Aditi; Swart, Estienne Carl; Nowacki, Mariusz (2014). Pdsg1 and Pdsg2, novel proteins involved in developmental genome remodelling in Paramecium. PLoS ONE, 9(11), e112899. Public Library of Science 10.1371/journal.pone.0112899

Espinoza Mora, Maria del Rosario; Steeg, Christiane; Tartz, Susanne; Heussler, Volker; Sparwasser, Tim; Link, Andreas; Fleischer, Bernhard; Jacobs, Thomas (2014). Depletion of regulatory T cells augments a vaccine-induced T effector cell response against the liver-stage of malaria but fails to increase memory. PLoS ONE, 9(8), e104627. Public Library of Science 10.1371/journal.pone.0104627

Talman, Arthur M; Prieto, Judith H; Marques, Sara; Ubaida-Mohien, Ceereena; Lawniczak, Mara; Wass, Mark N; Xu, Tao; Frank, Roland; Ecker, Andrea; Limenitakis Stanway, Rebecca; Krishna, Sanjeev; Sternberg, Michael J E; Christophides, Georges K; Graham, David R; Dinglasan, Rhoel R; Yates, John R; Sinden, Robert E (2014). Proteomic analysis of the Plasmodium male gamete reveals the key role for glycolysis in flagellar motility. Malaria journal, 13(315), p. 315. BioMed Central 10.1186/1475-2875-13-315

Fengos, Georgios; Schmidt, Alexander; Martin, Katrin; Fluri, Erika; Aebersold, Ruedi; Iber, Dagmar; Pertz, Olivier (2014). Spatial proteomic and phospho-proteomic organization in three prototypical cell migration modes. Proteome Science, 12, p. 23. BioMed Central 10.1186/1477-5956-12-23

Moreno, Eduardo (2014). Cancer: Darwinian tumour suppression. Nature, 509(7501), pp. 435-436. Macmillan Journals Ltd. 10.1038/nature13337

Gudo, B.; Nussberger, J.; Bohlender, Jürgen (2014). Variabilité des concentrations plasmatiques de l’angiotensinogène et risque d’hypertension artérielle chez le rat transgénique. Annales de cardiologie et d'angéiologie, 63(3), pp. 124-127. Elsevier Masson 10.1016/j.ancard.2014.04.017

Wampfler, Petra B.; Faso, Carmen; Hehl, Adrian B. (2014). The Cre/loxP system in Giardia lamblia: genetic manipulations in a binucleate tetraploid protozoan. International journal for parasitology, 44(8), pp. 497-506. Elsevier 10.1016/j.ijpara.2014.03.008

Cirovic, Olivera; Ochsenreiter, Torsten (2014). Whole proteome analysis of the protozoan parasite Trypanosoma brucei using stable isotope labeling by amino acids in cell culture and mass spectrometry. Methods in molecular biology, 1188, pp. 47-55. Springer 10.1007/978-1-4939-1142-4_4

2013

Ferreira, Helder C; Towbin, Benjamin D; Jegou, Thibaud; Gasser, Susan M (2013). The shelterin protein POT-1 anchors Caenorhabditis elegans telomeres through SUN-1 at the nuclear periphery. Journal of cell biology, 203(5), pp. 727-735. Rockefeller Institute Press 10.1083/jcb.201307181

Cirovic, Olivera; Ochsenreiter, Torsten (2013). Whole Proteome Analysis of the Protozoan Parasite Trypanosoma brucei using Stable Isotope Labeling by Amino Acids in Cell Culture and Mass Spectrometry. In: SILAC. Methods in Molecular Biology. Heidelberg: Springer

Saxena, Smita; Roselli, Francesco; Singh, Katyayani; Leptien, Kerstin; Julien, Jean-Pierre; Gros-Louis, Francois; Caroni, Pico (2013). Neuroprotection through excitability and mTOR required in ALS motoneurons to delay disease and extend survival. Neuron, 80(1), pp. 80-96. Cell Press 10.1016/j.neuron.2013.07.027

Knüsel, Sebastian; Roditi, Isabel (2013). Insights into the regulation of GPEET procyclin during differentiation from early to late procyclic forms of Trypanosoma brucei. Molecular and biochemical parasitology, 191(2), pp. 66-74. Elsevier 10.1016/j.molbiopara.2013.09.004

Falkard, Brie; Kumar, T R Santha; Hecht, Leonie-Sophie; Matthews, Krista A; Henrich, Philipp P; Gulati, Sonia; Lewis, Rebecca E; Manary, Micah J; Winzeler, Elizabeth A; Sinnis, Photini; Prigge, Sean T; Heussler, Volker; Deschermeier, Christina; Fidock, David (2013). A key role for lipoic acid synthesis during Plasmodium liver stage development. Cellular microbiology, 15(9), pp. 1585-604. Blackwell 10.1111/cmi.12137

Dix, Carly I; Soundararajan, HC; Dzhindzhev, NS; Begum, F; Suter, Beat; Ohkura, H; Stephens, E; Bullock, SL (2013). Lissencephaly-1 promotes the recruitment of dynein and dynactin to transported mRNAs. Journal of cell biology, 202(3), pp. 479-494. Rockefeller Institute Press 10.1083/jcb.201211052

Fritz, Rafael D; Letzelter, Michel; Reimann, Andreas; Martin, Katrin; Fusco, Ludovico; Ritsma, Laila; Ponsioen, Bas; Fluri, Erika; Schulte-Merker, Stefan; van Rheenen, Jacco; Pertz, Olivier (2013). A versatile toolkit to produce sensitive FRET biosensors to visualize signaling in time and space. Science signaling, 6(285), rs12. American Association for the Advancement of Science 10.1126/scisignal.2004135

Merino, Marisa M.; Rhiner, Christa; Portela, Marta; Moreno, Eduardo (2013). “Fitness Fingerprints” Mediate Physiological Culling of Unwanted Neurons in Drosophila. Current Biology, 23(14), pp. 1300-1309. Cell Press 10.1016/j.cub.2013.05.053

Macêdo, Juan P.; Schmidt, Remo S.; Mäser, Pascal; Rentsch, Doris; Vial, Henri J.; Sigel, Erwin; Bütikofer, Peter (2013). Characterization of choline uptake in Trypanosoma brucei procyclic and bloodstream forms. Molecular and biochemical parasitology, 190(1), pp. 16-22. Amsterdam: Elsevier 10.1016/j.molbiopara.2013.05.007

Towbin, Benjamin D; Gonzalez-Sandoval, Adriana; Gasser, Susan M (2013). Mechanisms of heterochromatin subnuclear localization. Trends in biochemical sciences, 38(7), pp. 356-363. Elsevier 10.1016/j.tibs.2013.04.004

Gonzalez-Sandoval, Adriana; Towbin, Benjamin D; Gasser, Susan M (2013). The formation and sequestration of heterochromatin during development: delivered on 7 September 2012 at the 37th FEBS Congress in Sevilla, Spain. The FEBS journal, 280(14), pp. 3212-3219. FEBS Press 10.1111/febs.12319

Fernández Hernández, Ismael; Rhiner, Christa; Moreno, Eduardo (2013). Adult Neurogenesis in Drosophila. Cell reports, 3(6), pp. 1857-1865. Cell Press 10.1016/j.celrep.2013.05.034

Sharma, Rahul; Meister, Pierre (2013). Nuclear organization in the nematode C. elegans. Current opinion in cell biology, 25(3), pp. 395-402. Elsevier 10.1016/j.ceb.2013.02.002

Chapman, Ben B.; Eriksen, Anders; Baktoft, Henrik; Brodersen, Jakob; Nilsson, Daniel; Hulthen, Kaj; Brönmark, Christer; Hansson, Lars-Anders; Grønkjær, Peter; Skov, Christian; Fenton, Brock (2013). A Foraging Cost of Migration for a Partially Migratory Cyprinid Fish. PLoS ONE, 8(5), e61223. 10.1371/journal.pone.0061223

Moreno, Eduardo (2013). The “Out of Africa Tribe” (II): Paleolithic warriors with big canoes and protective weapons. Communicative & integrative biology, 6(3), e24145. Landes Bioscience 10.4161/cib.24145

Nagel, Andreas; Prado, Monica; Heitmann, Anna; Tartz, Susanne; Jacobs, Thomas; Deschermeier, Christina; Helm, Susanne; Stanway, Rebecca; Heussler, Volker (2013). A new approach to generate a safe double-attenuated Plasmodium liver stage vaccine. International journal for parasitology, 43(6), pp. 503-514. Elsevier 10.1016/j.ijpara.2013.01.010

Dostalova, Anna; Käser, Sandro; Cristodero, Marina; Schimanski, Bernd (2013). The nuclear mRNA export receptor Mex67-Mtr2 of Trypanosoma brucei contains a unique and essential zinc finger motif. Molecular microbiology, 88(4), pp. 728-39. Blackwell Science 10.1111/mmi.12217

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Rohner, Sabine; Kalck, Veronique; Wang, Xuefei; Ikegami, Kohta; Lieb, Jason D.; Gasser, Susan M.; Meister, Peter; Meister, Pierre (2013). Promoter- and RNA polymerase II-dependent hsp-16 gene association with nuclear pores in Caenorhabditis elegans. Journal of cell biology, 200(5), pp. 589-604. Rockefeller Institute Press 10.1083/jcb.201207024

Tartz, Susanne; Deschermeier, Christina; Retzlaff, Silke; Heussler, Volker; Sebo, Peter; Fleischer, Bernhard; Jacobs, Thomas (2013). Plasmodium berghei sporozoite challenge of vaccinated BALB/c mice leads to the induction of humoral immunity and improved function of CD8(+) memory T cells. European journal of immunology, 43(3), pp. 693-704. Wiley-VCH 10.1002/eji.201142262

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Zünd, David; Gruber, Andreas; Zavolan, Mihaela; Mühlemann, Oliver (2013). Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs. Nature structural & molecular biology, 20(8), pp. 936-943. New York, N.Y.: Nature Publishing Group 10.1038/nsmb.2635

Stanway, Rebecca R.; Schmuckli-Maurer, Jacqueline; Heussler, Volker (2013). Analysis of liver stage development in and merozoite release from hepatocytes. In: Ménard, Robert (ed.) Malaria, Methods and Protocols. Methods in Molecular Biology: Vol. 923 (pp. 411-427). Humana Press 10.1007/978-1-62703-026-7_29

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Lanctôt, Christian; Meister, Pierre (2013). Microscopic analysis of chromatin localization and dynamics in C. elegans. In: Shav-Tal, Yaron (ed.) Imaging Gene Expression. Methods in Molecular Biology: Vol. 1042 (pp. 153-172). New York: Humana Press 10.1007/978-1-62703-526-2_11

Duque, S.; Porensky, P.; William, D.A.; Odermatt, Philipp; Nlend, Rachel; Bevan, A.K.; Foust, K.; Braun, L.; Schmelzer, L.; Schümperli, Daniel; Kaspar, B.K.; Burghes, A.H.M. (2013). O.8 Intrathecal delivery of AAV9 vectors to model and rescue a large animal model of SMA. Neuromuscular disorders, 23(9-10), p. 797. Elsevier 10.1016/j.nmd.2013.06.558

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2012

Burghes, A.; McGovern, V.; Porensky, P.; Duque, S.; Bevan, A.; Foust, K.; Odermatt, P.; Nlend, R.; Massoni-Laporte, A.; Mitrpant, C.; Wilton, S.; Schümperli, Daniel; Kaspar, B. (October 2012). Spinal muscular atrophy SMA: SMNs spatial requirement and therapies. Neuromuscular disorders, 22(9-10), pp. 907-908. Amsterdam: Elsevier 10.1016/j.nmd.2012.06.342

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de Koning, H.; Gould, M.; Sterk, G.J.; Tenor, H.; Kunz, S.; Luginbuehl, E.; Seebeck, T. (2012). Pharmacological Validation of Trypanosoma brucei Phosphodiesterases as Novel Drug Targets. Journal of infectious diseases, 206(2), pp. 229-237. Cary, N.C.: Oxford University Press 10.1093/infdis/jir857

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Petrova, E.; López-Gay, J.M.; Rhiner, C.; Moreno, E. (2012). Flower-deficient mice have reduced susceptibility to skin papilloma formation. Disease models & mechanisms, 5(4), pp. 553-561. Cambridge: Company of Biologists Ltd. 10.1242/dmm.008623

Moreno, E. (2012). Design and Construction of "Synthetic Species". PLoS ONE, 7(7), e39054. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0039054

Lolo, F.; Casas-Tinto, S.; Moreno, E. (2012). Cell competition time line: winners kill losers, which are extruded and engulfed by hemocytes. Cell reports, 2(3), pp. 526-539. Cambridge, Mass.: Cell Press 10.1016/j.celrep.2012.08.012

Towbin, B.D.; Gonzalez-Aguilera, C.; Sack, R.; Gaidatzis, D.; Kalck, V.; Meister, Peter; Askjaer, P.; Gasser, S.M. (2012). Step-Wise Methylation of Histone H3K9 Positions Heterochromatin at the Nuclear Periphery. Cell, 150(5), pp. 934-947. Cambridge, Mass.: Cell Press 10.1016/j.cell.2012.06.051

Urwyler, Olivier; Cortinas-Elizondo, Fabiola; Suter, Beat (2012). Drosophila sosie functions with beta(H)-Spectrin and actin organizers in cell migration, epithelial morphogenesis and cortical stability. Biology open BiO, 1(10), pp. 994-1005. Cambridge: Company of Biologists 10.1242/bio.20122154

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Beuchle, D.; Jaumouillé, E.; Nagoshi, E. (2012). The Nuclear Receptor unfulfilled Is Required for Free-Running Clocks in Drosophila Pacemaker Neurons. Current Biology, 22(13), pp. 1221-1227. Cambridge, Mass.: Cell Press 10.1016/j.cub.2012.04.052

Fang, Wenwen; Wang, Xing; Bracht, John R.; Nowacki, Mariusz; Landweber, Laura F. (2012). Piwi-Interacting RNAs Protect DNA against Loss during Oxytricha Genome Rearrangement. Cell, 151(6), pp. 1243-1255. Cambridge, Mass.: Cell Press 10.1016/j.cell.2012.10.045

Kolbaum, J; Tartz, S; Hartmann, W; Helm, S; Nagel, A; Heussler, Volker; Sebo, P; Fleischer, B; Jacobs, T; Breloer, M (2012). Nematode-induced interference with the anti-Plasmodium CD8+ T-cell response can be overcome by optimizing antigen administration. European journal of immunology, 42(4), pp. 890-900. Weinheim: Wiley-VCH 10.1002/eji.201141955

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Mani, J.; Gunasekera, K.; Roditi, I. (2012). RNA-Seq Analysis of the Transcriptome of Trypanosoma brucei. In: Bindereif, Albrecht (ed.) RNA Metabolism in Trypanosomes. Nucleic Acids and Molecular Biology: Vol. 28 (pp. 237-265). Heidelberg: Springer Verlag 10.1007/978-3-642-28687-2_11

Meyer, K.; Schümperli, Daniel (2012). Antisense Derivatives of U7 Small Nuclear RNA as Modulators of Pre-mRNA Splicing. In: Stamm, Stefan; Smith, Christopher W. J.; Lührmann, Reinhard (eds.) Alternative pre-mRNA Splicing: Theory and Protocols (pp. 481-494). Chichester: John Wiley & Sons 10.1002/9783527636778.ch45

Nlend Nlend, R.; Schümperli, Daniel (2012). Antisense Genes to Induce Exon Inclusion. In: Aartsma-Rus, Annemieke (ed.) Exon Skipping : Methods and Protocols. Methods in Molecular Biology: Vol. 867 (pp. 325-347). Heidelberg: Springer 10.1007/978-1-61779-767-5_21

Swart, E.C.; Nowacki, M.; Shum, J.; Stiles, H.; Higgins, B.P.; Doak, T.G.; Schotanus, K.; Magrini, V.J.; Minx, P.; Mardis, E.R.; Landweber, L.F. (2012). The Oxytricha trifallax mitochondrial genome. Genome biology and evolution, 4(2), pp. 136-154. Oxford: Oxford University Press 10.1093/gbe/evr136

Schümperli, Daniel (2012). Beeinflusst die moderne Bio- und Gentechnologie die Evolution? In: Dubach, Martina (ed.) Evolution wohin? Die Folgen der darwinschen Theorie (pp. 201-213). Zürich: vdf Hochschulverlag

Schümperli, Daniel (2012). Eigenschaften gentechnisch veränderter Pflanzen. In: , (ed.) Nutzen und Risiken der Freisetzung gentechnisch veränderter Pflanzen. Chancen nutzen, Risiken vermeiden, Kompetenzen erhalten. Programmsynthese NFP 59 (pp. 74-95). Zürich: vdf Hochschulverlag

Deschermeier, C.; Hecht, L.S.; Bach, F.; Rützel, K.; Stanway, R.R.; Nagel, A.; Seeber, F.; Heussler, Volker (2012). Mitochondrial lipoic acid scavenging is essential for Plasmodium berghei liver stage development. Cellular microbiology, 14(3), pp. 416-430. Oxford: Blackwell 10.1111/j.1462-5822.2011.01729.x

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Feltrin, Daniel; Fusco, Ludovico; Witte, Harald; Moretti, Francesca; Martin, Katrin; Letzelter, Michel; Fluri, Erika; Scheiffele, Peter; Pertz, Olivier (2012). Growth cone MKK7 mRNA targeting regulates MAP1b-dependent microtubule bundling to control neurite elongation. PLoS biology, 10(12), e1001439. Public Library of Science 10.1371/journal.pbio.1001439

2011

Conger, Renata; Chen, Yani; Fornaciari, Silvia; Faso, Carmen; Held, Michael A.; Renna, Luciana; Brandizzi, Federica (2011). Evidence for the involvement of the Arabidopsis SEC24A in male transmission. Journal of Experimental Botany, 62(14), pp. 4917-4926. Oxford University Press 10.1093/jxb/err174

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Ruepp, Marc-David; Schweingruber, Christoph; Kleinschmidt, Nicole; Schümperli, Daniel (2011). Interactions of CstF-64, CstF-77, and symplekin: Implications on localisation and function. Molecular biology of the cell, 22(1), pp. 91-104. Bethesda, Md.: American Society for Cell Biology 10.1091/mbc.E10-06-0543

Ruepp, Marc-David; Schümperli, Daniel; Barabino, Silvia M.L. (2011). mRNA 3' end processing and more - multiple functions of mammalian cleavage factor I-68. RNA - a publication of the RNA Society, 2(1), pp. 79-91. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1002/wrna.35

Mani, Jan; Güttinger, Andreas; Schimanski, Bernd; Heller, Manfred; Acosta-Serrano, Alvaro; Pescher, Pascale; Späth, Gerald; Roditi, Isabel (2011). Alba-domain proteins of Trypanosoma brucei are cytoplasmic RNA-binding proteins that interact with the translation machinery. PLoS ONE, 6(7), e22463. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0022463

Kuhn-Nentwig, Lucia; Willems, Jean; Seebeck, Thomas; Shalaby, Tarek; Kaiser, Marcel; Nentwig, Wolfgang (2011). Cupiennin 1a exhibits a remarkably broad, non-stereospecific cytolytic activity on bacteria, protozoan parasites, insects, and human cancer cells. Amino acids, 40(1), pp. 69-76. Wien: Springer Vienna 10.1007/s00726-009-0471-0

Casas-Tinto, Sergio; Torres, Miguel; Moreno, Eduardo (2011). The "Flower Code" and Cancer Development. Clinical & translational oncology, 13(1), pp. 5-9. Madrid: Feseo 10.1007/s12094-011-0610-4

Nowacki, Mariusz; Shetty, Keerthi; Landweber, Laura F. (2011). RNA-Mediated Epigenetic Programming of Genome Rearrangements. Annual review of genomics and human genetics, 12(1), pp. 367-389. Palo Alto, Calif.: Annual Reviews Inc. 10.1146/annurev-genom-082410-101420

Saxena, Smita; Caroni, Pico (2011). Selective neuronal vulnerability in neurodegenerative diseases: from stressor thresholds to degeneration. Neuron, 71(1), pp. 35-48. Cambridge, Mass.: Cell Press 10.1016/j.neuron.2011.06.031

Petrova, Evgeniya; Soldini, Davide; Moreno, Eduardo (2011). The expression of SPARC in human tumors is consistent with its role during cell competition. Communicative & integrative biology, 4(2), pp. 171-174. Austin, Tex.: Landes Bioscience 10.4161/cib.4.2.14232

Moreno, Eduardo (2011). The society of our "out of Africa" ancestors (I): The migrant warriors that colonized the world. Communicative & integrative biology, 2(163-170), p. 8. Austin, Tex.: Landes Bioscience 10.4161/cib.4.2.14320

Moreno, Eduardo (2011). Design and construction of a new Drosophila species, D.synthetica, by synthetic regulatory evolution. Nature precedings - pre-publication research and preliminary findings London: Nature Publishing Group

Moreno, Eduardo; y López-Gay, Jesús M. (2011). Competición celular: las guerras floridas. Investigación y ciencia - edición en español de Scientific American, 419(130-133), p. 4. Barcelona: Prensa Cientifica

Vazquez-Pianzola, Paula; Urlaub, Henning; Suter, Beat (2011). Pabp binds to the osk 3'UTR and specifically contributes to osk mRNA stability and oocyte accumulation. Developmental biology, 357(2), pp. 404-418. San Diego, Calif.: Elsevier 10.1016/j.ydbio.2011.07.009

Amino, R.; Bassat, Q.; Baum, J.; Billker, O.; Bogyo, M.; Bousema, T.; Christophides, G.; Deitsch, K.; Dinglasan, R.; Djimde, A.; Duraisingh, M.; Dzinjalamala, F.; Happi, C.; Heussler, Volker; Kramarik, J.; de Koning-Ward, T.; Lacerda, M.; Laufer, M.; Lim, P.; Llinas, M.; ... (2011). A research agenda for malaria eradication: basic science and enabling technologies. PLoS medicine, 8(1), e1000399. San Francisco, Calif.: Public Library of Science 10.1371/journal.pmed.1000399

Graewe, Stefanie; Rankin, Kathleen E.; Lehmann, Christine; Deschermeier, Christina; Hecht, Leonie; Froehlke, Ulrike; Stanway, Rebecca R.; Heussler, Volker (2011). Hostile takeover by Plasmodium: reorganization of parasite and host cell membranes during liver stage egress. PLoS pathogens, 7(9), e1002224. San Francisco, Calif.: Public Library of Science 10.1371/journal.ppat.1002224

Hansen, G.; Heitmann, A.; Witt, T.; Li, H.; Jiang, H.; Shen, X.; Heussler, Volker; Rennenberg, A.; Hilgenfeld, R. (2011). Structural basis for the regulation of cysteine-protease activity by a new class of protease inhibitors in Plasmodium. Structure, 19(7), pp. 919-929. Cambridge, Mass.: Cell Press 10.1016/j.str.2011.03.025

Hansen, G.; Schwarzloh, B.; Rennenberg, A.; Heussler, Volker; Hilgenfeld, R. (2011). The macromolecular complex of ICP and falcipain-2 from Plasmodium: preparation, crystallization and preliminary X-ray diffraction analysis. Acta crystallographica. Section F - Structural biology and crystallization communications online, 67(Pt 11), pp. 1406-10. Oxford: Wiley-Blackwell 10.1107/S1744309111034592

Martin-Jaular, L.; Ferrer, M.; Calvo, M.; Rosanas-Urgell, A.; Kalko, S.; Graewe, S.; Soria, G.; Cortadellas, N.; Ordi, J.; Planas, A.; Burns, J.; Heussler, Volker; del Portillo, H. A. (2011). Strain-specific spleen remodelling in Plasmodium yoelii infections in Balb/c mice facilitates adherence and spleen macrophage-clearance escape. Cellular microbiology, 13(1), pp. 109-122. Oxford: Blackwell 10.1111/j.1462-5822.2010.01523.x

Sicard, A.; Semblat, J. P.; Doerig, C.; Hamelin, R.; Moniatte, M.; Dorin-Semblat, D.; Spicer, J. A.; Srivastava, A.; Retzlaff, S.; Heussler, Volker; Waters, A. P.; Doerig, C. (2011). Activation of a PAK-MEK signalling pathway in malaria parasite-infected erythrocytes. Cellular microbiology, 13(6), pp. 836-845. Oxford: Blackwell 10.1111/j.1462-5822.2011.01582.x

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Mattout, A.; Pike, B.L.; Towbin, B.D.; Bank, E.M.; Gonzalez-Sandoval, A.; Stalder, M.B.; Meister, Peter; Gruenbaum, Y.; Gasser, S.M. (2011). An EDMD mutation in C. elegans lamin blocks muscle-specific gene relocation and compromises muscle integrity. Current Biology, 21(19), pp. 1603-1614. Cambridge, Mass.: Cell Press 10.1016/j.cub.2011.08.030

Meister, P.; Mango, S.E.; Gasser, S.M. (2011). Locking the genome: nuclear organization and cell fate. Current opinion in genetics & development, 21(2), pp. 167-174. Amsterdam: Elsevier 10.1016/j.gde.2011.01.023

Gehlen, L.R.; Nagai, S.; Shimada, K.; Meister, P.; Taddei, A.; Gasser, S.M. (2011). Nuclear geometry and rapid mitosis ensure asymmetric episome segregation in yeast. Current Biology, 21(1), pp. 25-33. Cambridge, Mass.: Cell Press 10.1016/j.cub.2010.12.016

Braunschweig, M.H.; Owczarek-Lipska, M.; Stahlberger-Saitbekova, N. (2011). Relationship of porcine IGF2 imprinting status to DNA methylation at the H19 DMD and the IGF2 DMRs 1 and 2. BMC genetics, 12(1), p. 47. London: BioMed Central 10.1186/1471-2156-12-47

2010

Vanderschuren, Hervé; Heinzmann, Dominik; Faso, Carmen; Stupak, Martin; Arga, Kazim Yalçin; Hoerzer, Helen; Laizet, Yech’an; Leduchowska, Paulina; Silva, Nádia; Šimková, Klára (2010). A cross-sectional study of biotechnology awareness and teaching in European high schools. New biotechnology, 27(6), pp. 822-828. Elsevier 10.1016/j.nbt.2010.01.338

Pertz, Olivier (2010). Spatio-temporal Rho GTPase signaling - where are we now? Journal of cell science, 123(Pt 11), pp. 1841-1850. Company of Biologists Limited 10.1242/jcs.064345

Putrianti, Elyzana D; Schmidt-Christensen, Anja; Arnold, Iris; Heussler, Volker; Matuschewski, Kai; Silvie, Olivier (2010). The Plasmodium serine-type SERA proteases display distinct expression patterns and non-essential in vivo roles during life cycle progression of the malaria parasite. Cellular microbiology, 12(6), pp. 725-739. Blackwell 10.1111/j.1462-5822.2009.01419.x

Rankin, Kathleen E; Graewe, Stefanie; Heussler, Volker; Stanway, Rebecca R (2010). Imaging liver-stage malaria parasites. Cellular microbiology, 12(5), pp. 569-579. Blackwell 10.1111/j.1462-5822.2010.01454.x

Meister, Peter; Towbin, Benjamin D.; Pike, Brietta L; Ponti, Aaron; Gasser, Susan M (2010). The spatial dynamics of tissue-specific promoters during C. elegans development. Genes & development, 24(8), pp. 766-782. Cold Spring Harbor Laboratory Press 10.1101/gad.559610

Patil, Jaspal; Schwab, Alexander; Nussberger, Juerg; Schaffner, Thomas; Saavedra, Juan M; Imboden, Hans (2010). Intraneuronal angiotensinergic system in rat and human dorsal root ganglia. Regulatory peptides, 162(1-3), pp. 90-8. Amsterdam: Elsevier 10.1016/j.regpep.2010.03.004

Voigt, Tilman; Meyer, Kathrin; Baum, Oliver; Schümperli, Daniel (2010). Ultrastructural changes in diaphragm neuromuscular junctions in a severe mouse model for Spinal Muscular Atrophy and their prevention by bifunctional U7 snRNA correcting SMN2 splicing. Neuromuscular disorders, 20(11), pp. 744-52. Amsterdam: Elsevier 10.1016/j.nmd.2010.06.010

Matulis, Gediminas; Sanderson, Joseph P; Lissin, Nikolai M; Asparuhova, Maria B; Bommineni, Gopal R; Schümperli, Daniel; Schmidt, Richard R; Villiger, Peter M; Jakobsen, Bent K; Gadola, Stephan D (2010). Innate-like control of human iNKT cell autoreactivity via the hypervariable CDR3beta loop. PLoS biology, 8(6), e1000402. Lawrence, Kans.: Public Library of Science 10.1371/journal.pbio.1000402

Rufener, Lucien; Baur, Roland; Kaminsky, Ronald; Mäser, Pascal; Sigel, Erwin (2010). Monepantel allosterically activates DEG-3/DES-2 channels of the gastrointestinal nematode Haemonchus contortus. Molecular pharmacology, 78(5), pp. 895-902. Bethesda, Md.: American Society for Pharmacology and Experimental Therapeutics 10.1124/mol.110.066498

Vincent, Bruno; Kaeslin, Martha; Roth, Thomas; Heller, Manfred; Poulain, Julie; Cousserans, François; Schaller, Johann; Poirié, Marylène; Lanzrein, Beatrice Constance; Drezen, Jean-Michel; Moreau, Sébastien JM (2010). The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach. BMC Genomics, 11(1), p. 693. London: BioMed Central 10.1186/1471-2164-11-693

Wetterwald, C; Roth, T; Kaeslin, M; Annaheim, M; Wespi, G; Heller, M; Mäser, P; Roditi, I; Pfister-Wilhelm, R; Bézier, A; Gyapay, G; Drezen, JM; Lanzrein, B (2010). Identification of bracovirus particle proteins and analysis of their transcript levels at the stage of virion formation. Journal of general virology, 91(10), pp. 2610-2619. Reading: Society for General Microbiology 10.1099/vir.0.022699-0

Ruepp, Marc-David; Schweingruber, Christoph; Kleinschmidt, Nicole; Schümperli, Daniel (2010). Interactions of symplekin, CstF-64, and CstF-77. Implications for localisation, stability and function. In: The Fifteenth Annual Meeting of the RNA Society Seattle, Washington USA, June 22-26, 2010 (p. 1). RNA Society

Nicholson, Pamela; Mühlemann, Oliver (2010). Understanding the mechanism of RNA degradation in the nonsense-mediated mRNA decay pathway. In: Conference - Post transcriptional control: mRNA translation, localization and turnover, 8th-10th June, Edinburgh, Scotland.

Nicholson, Pamela; Stalder, Lukas; Eberle, Andrea; Bühler, Marc; Mühlemann, Oliver (2010). Investigating nonsense-mediated transcriptional gene silencing: a novel quality-control mechanism. In: Abstract Swiss RNA workshop January 2010 (p. 1). Bern: Universität Bern

Zünd, David; Joncourt, Raphael; Mühlemann, Oliver (2010). Two different degradation pathways in nonsense-mediated mRNA decay? In: Abstract Swiss RNA workshop January 2010 (p. 1). Bern: Universität Bern

Yepiskoposyan, Hasmik; Aeschimann, Florian; Mühlemann, Oliver (2010). Microarray analysis of NMD depletion in human cells. In: Abstract Swiss RNA workshop January 2010 (p. 1). Bern: Universität Bern

Yepiskoposyan, Hasmik; Aeschimann, Florian; Mühlemann, Oliver (2010). Most mRNAs encoding human NMD factors are NMD substrates: evidence for auto-regulation. In: ESF RNAquality Conference, Vienna, May 10-13, 2010.

Yepiskoposyan, Hasmik; Aeschimann, Florian; Mühlemann, Oliver (2010). Most mRNAs encoding human NMD factors are NMD substrates: evidence for auto-regulation. In: The Fifteenth Annual Meeting of the RNA Society Seattle, Washington USA, June 22-26, 2010 (p. 1). RNA Society

Mühlemann, Oliver; Yepiskoposyan, Hasmik; Aeschimann, Florian (2010). Most mRNAs encoding human NMD factors are NMD substrates: evidence for auto-regulation. In: Post-transcriptional control of gene expression, FASEB summer research conference, Carefree Arizona, USA.

De Turris, Valeria; Nicholson, Pamela; Zamudio, Rodolfo; Singer, Robert; Mühlemann, Oliver (2010). Live-cell imaging reveals that SMG6 and UPF1 inhibit release of nonsense mRNA from the transcription site. In: TERM 2010: RNA quality control meeting in Seillac, France.

Metze, Stefanie; Mühlemann, Oliver (2010). Analysis of (premature) stop codon recognition in HeLa translation extracts. In: The Complex Life of mRNA: From Synthesis to Decay, EMBO Conference Heidelberg on RNA processing.

Yepiskoposyan, Hasmik; Aeschimann, Florian; Mühlemann, Oliver (2010). Most mRNAs encoding human NMD factors are NMD substrates: evidence for auto-regulation. In: Gordon Research Conference on the Biology of Post-Transcriptional Gene Regulation. Newport, RI, USA.

Metze, Stefanie; Mühlemann, Oliver (2010). Analysis of (premature) stop codon recognition in HeLa translation extracts. In: Abstract Swiss RNA workshop January 2010 (p. 1). Bern: Universität Bern

Aeby, Eric; Ullu, Elisabetta; Yepiskoposyan, Hasmik; Schimanski, Bernd; Roditi, Isabel; Mühlemann, Oliver; Schneider, André (2010). tRNASec is transcribed by RNA polymerase II in Trypanosoma brucei but not in humans. Nucleic acids research, 38(17), pp. 5833-5843. London: Oxford University Press 10.1093/nar/gkq345

Nicholson, Pamela; Mühlemann, Oliver (2010). Cutting the nonsense: the degradation of PTC containing mRNAs. Biochemical Society transactions, 38(6), pp. 1615-1620. London: Portland Press 10.1042/BST0381615

Mühlemann, Oliver; Lykke-Andersen, Jens (2010). How and where are nonsense mRNAs degraded in mammalian cells? RNA biology, 7(1), pp. 1-5. Georgetown, Tex.: Landes Bioscience

Ruepp, Marc-David; Vivarelli, Silvia; Pillai, Ramesh S.; Kleinschmidt, Nicole; Azzouz, Teldja N.; Barabino, Silvia M.L.; Schümperli, Daniel (2010). The 68 kDa subunit of mammalian cleavage factor I interacts with the U7 small nuclear ribonucleoprotein and participates in 30-end processing of animal histone mRNAs. Nucleic acids research, 38(21), pp. 7637-7650. London: Oxford University Press 10.1093/nar/gkq613

Cristodero, Marina; Seebeck, Thomas; Schneider, André (2010). Mitochondrial translation is essential in bloodstream forms of Trypanosoma brucei. Molecular microbiology, 78(3), pp. 757-769. Oxford: Blackwell Science 10.1111/j.1365-2958.2010.07368.x

Ittig, Damian; Luisier, Samuel; Weiler, Jan; Schümperli, Daniel; Leumann, Christian J. (2010). Improving gene silencing of siRNAs via tricyclo-DNA modification. Artificial DNA, PNA & XNA, 1(1), pp. 9-16. Austin, Tex.: Landes Bioscience 10.4161/adna.1.1.11385

Kaeslin, Martha; Reinhard, Monika; Bühler, Doris; Pfister-Wilhelm, Rita; Lanzrein, Beatrice (2010). Venom of the egg-larval parasitoid Chelonus inanitus is a complex mixture and has multiple biological effects. Journal of insect physiology, 56(7), pp. 686-694. Amsterdam: Elsevier 10.1016/j.jinsphys.2009.12.005

Curato, Caterina; Slavic, Svetlana; Dong, Jun; Skorska, Anna; Altarche-Xifró, Wassim; Miteva, Kapka; Kaschina, Elena; Thiel, Andreas; Imboden, Hans; Wang, Jianan; Steckelings, Ulrike; Steinhoff, Gustav; Unger, Thomas; Li, Jun (2010). Identification of noncytotoxic and IL-10-producing CD8+AT2R+ T cell population in response to ischemic heart injury. Journal of immunology, 185(10), pp. 6286-6293. Bethesda, Md.: American Association of Immunologists 10.4049/jimmunol.0903681

Frenkel, Lia; Dimant, Beatriz; Portiansky, Enrique; Imboden, Hans; Maldonado, Héctor; Delorenzi, Alejandro (2010). Neuroanatomical distribution of angiotensin-II-like neuropeptide within the central nervous system of the crab Chasmagnathus; physiological changes triggered by water deprivation. Cell and tissue research, 341(1), pp. 181-195. Heidelberg: Springer 10.1007/s00441-010-0990-8

Nilsson, Daniel; Gunasekera, Kapila; Mani, Jan; Osteras, Magne; Farinelli, Laurent; Baerlocher, Loic; Roditi, Isabel; Ochsenreiter, Torsten (2010). Spliced leader trapping reveals widespread alternative splicing patterns in the highly dynamic transcriptome of Trypanosoma brucei. PLoS pathogens, 6(8), e1001037. San Francisco, Calif.: Public Library of Science 10.1371/journal.ppat.1001037

Oberle, Michael; Balmer, Oliver; Brun, Reto; Roditi, Isabel (2010). Bottlenecks and the maintenance of minor genotypes during the life cycle of Trypanosoma brucei. PLoS pathogens, 6(7), e1001023. San Francisco, Calif.: Public Library of Science 10.1371/journal.ppat.1001023

Rufener, Lucien; Keiser, Jennifer; Kaminsky, Ronald; Mäser, Pascal; Nilsson, Daniel (2010). Phylogenomics of ligand-gated ion channels predicts monepantel effect. PLoS pathogens, 6(9), e1001091. San Francisco, Calif.: Public Library of Science 10.1371/journal.ppat.1001091

Nerima, Barbara; Nilsson, Daniel; Mäser, Pascal (2010). Comparative genomics of metabolic networks of free-living and parasitic eukaryotes. BMC Genomics, 11(1), p. 217. London: BioMed Central 10.1186/1471-2164-11-217

Mosimann, Marc; Goshima, Shinobu; Wenzler, Tanja; Lüscher, Alexandra; Uozumi, Nobuyuki; Mäser, Pascal (2010). A Trk/HKT-type K+ transporter from Trypanosoma brucei. Eukaryotic cell, 9(4), pp. 539-546. Washington, D.C.: American Society for Microbiology ASM 10.1128/EC.00314-09

Cameroni, Elisabetta; Stettler, Karin; Suter, Beat (2010). On the traces of XPD: cell cycle matters - untangling the genotype-phenotype relationship of XPD mutations. Cell division, 5(1), p. 24. London: BioMed Central 10.1186/1747-1028-5-24

Li, Xiaoming; Urwyler, Olivier; Suter, Beat (2010). Drosophila Ypd Regulates Cdk7 Localization, Mitotic Kinase Activity, Spindle Dynamics, and Chromosome Segregation. PLoS genetics, 6(3), e1000876. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1000876

Hajduk, Stephen; Ochsenreiter, Torsten (2010). RNA editing in kinetoplastids. RNA biology, 7(2), pp. 229-36. Georgetown, Tex.: Landes Bioscience 10.4161/rna.7.2.11393

Zhang, Xiaobai; Cui, Juan; Nilsson, Daniel; Gunasekera, Kapila; Chanfon, Astrid; Song, Xiaofeng; Wang, Huinan; Xu, Ying; Ochsenreiter, Torsten (2010). The Trypanosoma brucei MitoCarta and its regulation and splicing pattern during development. Nucleic acids research, 38(21), pp. 7378-87. London: Oxford University Press 10.1093/nar/gkq618

Steiner, Silvia; Kohli, Jürg; Ludin, Katja (2010). Functional interactions among members of the meiotic initiation complex in fission yeast. Current genetics, 56(3), pp. 237-249. Berlin: Springer-Verlag 10.1007/s00294-010-0296-0

Latypov, Vitaly; Rothenberg, Maja; Lorenz, Alexander; Octobre, Guillaume; Csutak, Ortansa; Lehmann, Elisabeth; Loidl, Josef; Kohli, Jürg (2010). Roles of Hop1 and Mek1 in meiotic chromosome pairing and recombination partner choice in Schizosaccharomyces pombe. Molecular and cellular biology, 30(7), pp. 1570-1581. Washington, D.C.: American Society for Microbiology 10.1128/MCB.00919-09

Nowacki, Mariusz; Haye, Joanna E.; Fang, Wenwen; Vijayan, Vikram; Landweber, Laura F. (2010). RNA-mediated epigenetic regulation of DNA copy number. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 107(51), pp. 22140-22144. Washington, D.C.: National Academy of Sciences NAS 10.1073/pnas.1012236107

Luginbuehl, Edith; Ryter, Damaris; Schranz-Zumkehr, Judith; Oberholzer, Michael; Kunz, Stefan; Seebeck, Thomas (2010). The N-terminus of phosphodiesterase TbrPDEB of Trypanosoma brucei contains the signal for integration into the flagellar skeleton. Eukaryotic cell, 9(10), pp. 1466-1475. Washington, D.C.: American Society for Microbiology ASM 10.1128/EC.00112-10

Nlend, Rachel Nlend; Meyer, Kathrin; Schümperli, Daniel (2010). Repair of pre-mRNA splicing: Prospects for a therapy for Spinal Muscular Atrophy. RNA biology, 7(4), pp. 730-740. Georgetown, Tex.: Landes Bioscience 10.4161/rna.7.4.12206

Barta, Andrea; Schümperli, Daniel (2010). Editorial on Alternative Splicing and Disease. RNA - a publication of the RNA Society, 7(4), pp. 388-389. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.4161/rna.7.4.12818

Zünd, David; Flury, Valentin; Umberto, Restuccia; Heller, Manfred; Bachi, Angela; Mühlemann, Oliver (2010). UPF1: phosphoprotein, RNA helicase and NMD core factor. In: Swiss RNA Workshop January 2011. Bern: Universität Bern

Nicholson, Pamela; Yepiskoposyan, Hasmik; Metze, Stefanie; Zamudio Orozco, Rodolfo; Kleinschmidt, Nicole; Mühlemann, Oliver (2010). Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors. Cellular and molecular life sciences, 67(5), pp. 677-700. Basel: SP Birkhäuser Verlag Basel 10.1007/s00018-009-0177-1

Jang, Kyung-Jin; Kim, Min Sung; Feltrin, Daniel; Jeon, Noo Li; Suh, Kahp-Yang; Pertz, Olivier (2010). Two distinct filopodia populations at the growth cone allow to sense nanotopographical extracellular matrix cues to guide neurite outgrowth. PLoS ONE, 5(12), e15966. Public Library of Science 10.1371/journal.pone.0015966

Rennenberg, Annika; Lehmann, Christine; Heitmann, Anna; Witt, Tina; Hansen, Guido; Nagarajan, Krishna; Deschermeier, Christina; Turk, Vito; Hilgenfeld, Rolf; Heussler, Volker (2010). Exoerythrocytic Plasmodium Parasites Secrete a Cysteine Protease Inhibitor Involved in Sporozoite Invasion and Capable of Blocking Cell Death of Host Hepatocytes. PLoS pathogens, 6(3), e1000825. Public Library of Science 10.1371/journal.ppat.1000825

Helm, Susanne; Lehmann, Christine; Nagel, Andreas; Stanway, Rebecca R; Horstmann, Sebastian; Llinas, Manuel; Heussler, Volker (2010). Identification and characterization of a liver stage-specific promoter region of the malaria parasite Plasmodium. PLoS ONE, 5(10), e13653. Public Library of Science 10.1371/journal.pone.0013653

Towbin, B. D.; Meister, P.; Pike, B. L.; Gasser, S. M. (2010). Repetitive transgenes in C. elegans accumulate heterochromatic marks and are sequestered at the nuclear envelope in a copy-number- and lamin-dependent manner. Cold Spring Harbor Symposia on Quantitative Biology, 75, pp. 555-565. Biological Laboratory 10.1101/sqb.2010.75.041

2009

Faso, Carmen; Boulaflous, Aurelia; Brandizzi, Federica (2009). The plant Golgi apparatus: last 10 years of answered and open questions. FEBS letters, 583(23), pp. 3752-3757. Elsevier 10.1016/j.febslet.2009.09.046

Faso, Carmen; Chen, Ya-Ni; Tamura, Kentaro; Held, Michael; Zemelis, Starla; Marti, Lucia; Saravanan, RamuSubramanian; Hummel, Eric; Kung, Leslie; Miller, Elizabeth; Hawes, Chris; Brandizzi, Federica (2009). A missense mutation in the Arabidopsis COPII coat protein Sec24A induces the formation of clusters of the endoplasmic reticulum and Golgi apparatus. The Plant Cell, 21(11), pp. 3655-3671. American Society of Plant Biologists 10.1105/tpc.109.068262

Doerig, C; Baker, D; Billker, O; Blackman, M J; Chitnis, C; Dhar Kumar, S; Heussler, Volker; Holder, A A; Kocken, C; Krishna, S; Langsley, G; Lasonder, E; Menard, R; Meissner, M; Pradel, G; Ranford-Cartwright, L; Sharma, A; Sharma, P; Tardieux, T; Tatu, U; ... (2009). Signalling in malaria parasites. The MALSIG consortium. Parasite, 16(3), pp. 169-182. Princeps Editions 10.1051/parasite/2009163169

Stanway, Rebecca R; Witt, Tina; Zobiak, Bernd; Aepfelbacher, Martin; Heussler, Volker (2009). GFP-targeting allows visualization of the apicoplast throughout the life cycle of live malaria parasites. Biology of the cell, 101(7), pp. 415-430. Wiley 10.1042/BC20080202

Graewe, Stefanie; Retzlaff, Silke; Struck, Nicole; Janse, Chris J; Heussler, Volker (2009). Going live: a comparative analysis of the suitability of the RFP derivatives RedStar, mCherry and tdTomato for intravital and in vitro live imaging of Plasmodium parasites. Biotechnology journal, 4(6), pp. 895-902. Wiley 10.1002/biot.200900035

Towbin, Benjamin D; Meister, Peter; Gasser, Susan M (2009). The nuclear envelope--a scaffold for silencing? Current opinion in genetics & development, 19(2), pp. 180-186. Elsevier 10.1016/j.gde.2009.01.006

Sturm, Angelika; Graewe, Stefanie; Franke-Fayard, Blandine; Retzlaff, Silke; Bolte, Stefanie; Roppenser, Bernhard; Aepfelbacher, Martin; Janse, Chris; Heussler, Volker (2009). Alteration of the parasite plasma membrane and the parasitophorous vacuole membrane during exo-erythrocytic development of malaria parasites. Protist, 160(1), pp. 51-63. Elsevier 10.1016/j.protis.2008.08.002

Lüder, Carsten G K; Stanway, Rebecca R; Chaussepied, Marie; Langsley, Gordon; Heussler, Volker (2009). Intracellular survival of apicomplexan parasites and host cell modification. International journal for parasitology, 39(2), pp. 163-173. Elsevier 10.1016/j.ijpara.2008.09.013

Seebeck, Thomas; Maeser, Pascal (2009). Drug Resistance in African Trypanosomiasis. In: Mayers, Douglas L. (ed.) Antimicrobial Drug Resistance. Infectious Disease: Vol. 2 (pp. 589-604). New York: Humana Press 10.1007/978-1-59745-180-2_42

Imboden, Hans; Patil, Jaspal; Nussberger, Juerg; Nicoud, Françoise; Hess, Benno; Ahmed, Nermin; Schaffner, Thomas; Wellner, Maren; Müller, Dominik; Inagami, Tadashi; Senbonmatsu, Takaaki; Pavel, Jaroslav; Saavedra, Juan M. (2009). Endogenous angiotensinergic system in neurons of rat and human trigeminal ganglia. Regulatory peptides, 154(1-3), pp. 23-31. Amsterdam: Elsevier 10.1016/j.regpep.2009.02.002

Eberle, Andrea B.; Lykke-Andersen, Søren; Mühlemann, Oliver; Jensen, Torben Heick (2009). SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells. Nature structural & molecular biology, 16(1), pp. 49-55. New York, N.Y.: Nature Publishing Group 10.1038/nsmb.1530

Meyer, Kathrin; Marquis, Julien; Trüb, Judith; Nlend Nlend, Rachel; Verp, Sonia; Ruepp, Marc-David; Imboden, Hans; Barde, Isabelle; Trono, Didier; Schümperli, Daniel (2009). Rescue of a severe mouse model for spinal muscular atrophy by U7 snRNA-mediated splicing modulation. Human molecular genetics, 18(3), pp. 546-555. Oxford: Oxford University Press 10.1093/hmg/ddn382

Pusnik, Mascha; Charrière, Fabien; Mäser, Pascal; Waller, Ross F.; Dagley, Michael J.; Lithgow, Trevor; Schneider, André (2009). The Single Mitochondrial Porin of Trypanosoma brucei is the Main Metabolite Transporter in the Outer Mitochondrial Membrane. Molecular Biology and Evolution, 26(3), pp. 671-680. Oxford: Oxford University Press 10.1093/molbev/msn288

Vassella, Erik; Oberle, Michael; Urwyler, Simon; Renggli, Christina Kunz; Studer, Erwin; Hemphill, Andrew; Fragoso, Cristina; Bütikofer, Peter; Brun, Reto; Roditi, Isabel (2009). Major surface glycoproteins of insect forms of Trypanosoma brucei are not essential for cyclical transmission by tsetse. PLoS ONE, 4(2), e4493. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0004493

Bézier, A; Annaheim, M; Herbinière, J; Wetterwald, C; Gyapay, G; Bernard-Samain, S; Wincker, P; Roditi, I; Heller, M; Belghazi, M; Pfister-Wilhelm, R; Periquet, G; Dupuy, C; Huguet, E; Volkoff, A.N.; Lanzrein, B; Drezen, J.M. (2009). Polydnaviruses of braconid wasps derive from an ancestral nudivirus. Science, 323(5916), pp. 926-930. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1166788

Koch, Rafael; Romana, Ledermann; Urwyler, Olivier; Heller, Manfred; Suter, Beat (2009). Systematic Functional Analysis of BicD Serine Phosphorylation and Intragenic Suppression of a Female Sterile Allele of BicD. PLoS ONE, 4(2), e4552. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0004552

Pfister-Wilhelm, Rita; Lanzrein, Beatrice (2009). Stage dependent influences of polydnaviruses and the parasitoid larva on host ecdysteroids. Journal of insect physiology, 55(8), pp. 707-715. Amsterdam: Elsevier 10.1016/j.jinsphys.2009.04.018

Bézier, Annie; Herbinière, Juline; Lanzrein, Beatrice; Drezen, Jean-Michel (2009). Polydnavirus hidden face: The genes producing virus particles of parasitic wasps. Journal of invertebrate pathology, 101(3), pp. 194-203. San Diego, Calif.: Elsevier 10.1016/j.jip.2009.04.006

Stalder, Lukas; Mühlemann, Oliver (2009). Processing bodies are not required for mammalian nonsense-mediated mRNA decay. RNA - a publication of the RNA Society, 15(7), pp. 1265-1273. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1261/rna.1672509

Eberle, Andrea; Herrmann, Kai; Jäck, Hans-Martin; Mühlemann, Oliver (2009). Equal transcription rates of productively and nonproductively rearranged immunoglobulin mu heavy chain alleles in a pro-B cell line. RNA - a publication of the RNA Society, 15(6), pp. 1021-1028. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1261/rna.1516409

Patil, Jaspal; Heiniger, Eva; Nussberger, Jürg; Schaffner, Thomas; Mühlemann, Oliver; Imboden, Hans (2009). Angiotensin II is an endogenous neurotransmitter for rat and human mesenteric resistance blood vessels. Journal of vascular research, 46(Suppl. 3), p. 34. Basel: Karger

Stalder, Lukas; Mühlemann, Oliver (2009). Processing bodies are not required for mammalian nonsense-mediated mRNA decay. In: Workshop "RNA Quality 2009", Gif sur Yvette, France, 13-15 May 2009. Strasbourg: European Science Foundation

Stalder, Lukas; Eberle, Andrea; Bühler, Marc; Nicholson, Pamela; Mühlemann, Oliver (2009). Nonsense-mediated transcriptional gene silencing: a puzzle far from being solved. In: Workshop "RNA Quality 2009", Gif sur Yvette, France, 13-15 May 2009. Strasbourg: European Science Foundation

Eberle, Andrea; Lykke-Andersen, Søren; Stalder, Lukas; Jensen, Torben Heick; Mühlemann, Oliver (2009). SMG6-mediated endonucleolytic cleavage of nonsense mRNA in human cells. In: EMBO conference on "Protein synthesis and translational control", Heidelberg (Germany), September 9-13, 2009. European Molecular Biology Laboratory (EMBL)

Mühlemann, Oliver (2009). New insights into identification and degradation of nonsense mRNAs in human cells. In: 5th Meeting on RNA research in Carcavelos, Portugal, November 5-6, 2009.

Marquis, J.; Kampfer, S.S.; Angehrn, L.; Schümperli, Daniel (2009). Doxycycline-controlled splicing modulation by regulated antisense U7 snRNA expression cassettes. Gene therapy, 16(1), pp. 70-7. London: Nature Publishing Group 10.1038/gt.2008.138

Ruepp, Marc-David; Aringhieri, Chiara; Vivarelli, Silvia; Cardinale, Stefano; Paro, Simona; Schümperli, Daniel; Barabino, Silvia M.L. (2009). Mammalian pre-mRNA 3' end processing factor CF I m 68 functions in mRNA export. Molecular biology of the cell, 20(24), pp. 5211-23. Bethesda, Md.: American Society for Cell Biology 10.1091/mbc.E09-05-0389

Hartsuiker, Edgar; Mizuno, Kenichi; Molnar, Monika; Kohli, Jürg; Ohta, Kunihiro; Carr, Antony M. (2009). Ctp1CtIP and Rad32Mre11 nuclease activity are required for Rec12Spo11 removal, but Rec12Spo11 removal is dispensable for other MRN-dependent meiotic functions. Molecular and cellular biology, 29(7), pp. 1671-81. Washington, D.C.: American Society for Microbiology 10.1128/MCB.01182-08

Rothenberg, Maja; Kohli, Jürg; Ludin, Katja (2009). Ctp1 and the MRN-complex are required for endonucleolytic Rec12 removal with release of a single class of oligonucleotides in fission yeast. PLoS genetics, 5(11), e1000722. San Francisco, Calif.: Public Library of Science 10.1371/journal.pgen.1000722

Ward, John M.; Mäser, Pascal; Schroeder, Julian I. (2009). Plant ion channels: gene families, physiology, and functional genomics analyses. Annual review of physiology, 71(1), pp. 59-82. Palo Alto, Calif.: Annual Reviews Inc. 10.1146/annurev.physiol.010908.163204

Rufener, Lucien; Mäser, Pascal; Roditi, Isabel; Kaminsky, Ronald (2009). Haemonchus contortus acetylcholine receptors of the DEG-3 subfamily and their role in sensitivity to monepantel. PLoS pathogens, 5(4), e1000380. San Francisco, Calif.: Public Library of Science 10.1371/journal.ppat.1000380

Rufener, Lucien; Kaminsky, Ronald; Mäser, Pascal (2009). In vitro selection of Haemonchus contortus for benzimidazole resistance reveals a mutation at amino acid 198 of beta-tubulin. Molecular and biochemical parasitology, 168(1), pp. 120-2. Amsterdam: Elsevier 10.1016/j.molbiopara.2009.07.002

Kuettel, Sabine; Mosimann, Marc; Mäser, Pascal; Kaiser, Marcel; Brun, Reto; Scapozza, Leonardo; Perozzo, Remo (2009). Adenosine Kinase of T. b. Rhodesiense identified as the putative target of 4-[5-(4-phenoxyphenyl)-2H-pyrazol-3-yl]morpholine using chemical proteomics. PLoS neglected tropical diseases, 3(8), e506. San Francisco, Calif.: Public Library of Science 10.1371/journal.pntd.0000506

Kazibwe, Anne J.; Nerima, Barbara; de Koning, Harry P.; Mäser, Pascal; Barrett, Michael P.; Matovu, Enock (2009). Genotypic status of the TbAT1/P2 adenosine transporter of Trypanosoma brucei gambiense isolates from Northwestern Uganda following melarsoprol withdrawal. PLoS neglected tropical diseases, 3(9), e523. San Francisco, Calif.: Public Library of Science 10.1371/journal.pntd.0000523

Nerima, B (2009). Diagnostics and Chemotherapy of Trypanosoma brucei. Bern: University of Bern

Altarche-Xifro, W.; Curato, C.; Kaschina, E.; Grzesiak, A.; Slavic, S.; Dong, J.; Kappert, K.; Steckelings, M.; Imboden, H.; Unger, T.; Li, J. (2009). Cardiac c-kit+AT2+ cell population is increased in response to ischemic injury and supports cardiomyocyte performance. Stem cells, 27(10), pp. 2488-97. Durham: AlphaMed Press 10.1002/stem.171

Kunz, Stefan; Luginbühl, Edith; Seebeck, Thomas (2009). Gene Conversion Transfers the GAF-A Domain of Phosphodiesterase TbrPDEB1 to One Allele of TbrPDEB2 of Trypanosoma brucei. PLoS neglected tropical diseases, 3(6), e455. San Francisco, Calif.: Public Library of Science 10.1371/journal.pntd.0000455

Fragoso, Cristina M.; Schumann Burkard, Gabriela; Oberle, Michael; Kunz Renggli, Christina; Hilzinger, Karen; Roditi, Isabel (2009). PSSA-2, a Membrane-Spanning Phosphoprotein of Trypanosoma brucei, Is Required for Efficient Maturation of Infection. PLoS ONE, 4(9), e7074. Lawrence, Kans.: Public Library of Science 10.1371/journal.pone.0007074

Haenni, Simon; Studer, Erwin; Schumann Burkard, Gabriela; Roditi, Isabel (2009). Bidirectional silencing of RNA polymerase I transcription by a strand switch region in Trypanosoma brucei. Nucleic acids research, 37(15), pp. 5007-5018. London: Oxford University Press 10.1093/nar/gkp513

Kunz, S.; Minca, M.; Luginbuehl, E.; Bregy, P.; Seebeck, T. (2009). Cyclic nucleotide signalling in the kinetoplastids. In: Bradshaw, Ralph A. (ed.) The Handbook of Cell Signaling (pp. 1543-1547). Fribourg: Academic Press

Seebeck, J.; Kiri, V.A. (2009). Some Practical Processes for Streamlining Post-Marketing Product Surveillance: A Synergistic Approach. Drug safety, 32(10), p. 889. Springer

Kissler, A. E.; Pettersson, N.; Frolich, A.; Sigrist, S. J.; Suter, Beat (2009). Drosophila cdk5 is Needed for Locomotive Behavior and NMJ Elaboration, but Seems Dispensable for Synaptic Transmission. Developmental neurobiology, 69(6), pp. 365-377. Hoboken, N.J.: Wiley Periodicals, Inc. 10.1002/Dneu.20711

Limenitakis Stanway, Rebecca; Graewe, Stefanie; Rennenberg, Annika; Helm, Susanne; Heussler, Volker T. (2009). Highly efficient subcloning of rodent malaria parasites by injection of single merosomes or detached cells. Nature protocols, 4(10), pp. 1433-1439. Nature Publishing Group 10.1038/nprot.2009.172

2008

Ménard, Robert; Heussler, Volker; Yuda, Masao; Nussenzweig, Victor (2008). Plasmodium pre-erythrocytic stages: what's new? Trends in parasitology, 24(12), pp. 564-569. Elsevier Current Trends 10.1016/j.pt.2008.08.009

Tartz, Susanne; Rüssmann, Holger; Kamanova, Jana; Sebo, Peter; Sturm, Angelika; Heussler, Volker; Fleischer, Bernhard; Jacobs, Thomas (2008). Complete protection against P. berghei malaria upon heterologous prime/boost immunization against circumsporozoite protein employing Salmonella type III secretion system and Bordetella adenylate cyclase toxoid. Vaccine, 26(47), pp. 5935-5943. Elsevier 10.1016/j.vaccine.2008.08.057

Heussler, Volker; Stanway, R R (2008). Cellular and molecular interactions between the apicomplexan parasites Plasmodium and Theileria and their host cells. Parasite, 15(3), pp. 211-218. Princeps Editions

Schmidt-Christensen, Anja; Sturm, Angelika; Horstmann, Sebastian; Heussler, Volker (2008). Expression and processing of Plasmodium berghei SERA3 during liver stages. Cellular microbiology, 10(8), pp. 1723-1734. Blackwell 10.1111/j.1462-5822.2008.01162.x

Patil, Jaspal; Heiniger, Eva; Schaffner, Thomas; Mühlemann, Oliver; Imboden, Hans (2008). Angiotensinergic neurons in sympathetic coeliac ganglia innervating rat and human mesenteric resistance blood vessels. Regulatory peptides, 147(1-3), pp. 82-87. Amsterdam: Elsevier 10.1016/j.regpep.2008.01.006

Goldshmidt, Hanoch; Sheiner, Lilach; Bütikofer, Peter; Roditi, Isabel; Uliel, Shai; Günzel, Mark; Engstler, Markus; Michaeli, Shulamit (2008). Role of protein translocation pathways across the endoplasmic reticulum in Trypanosoma brucei. Journal of biological chemistry, 283(46), pp. 32085-32098. Bethesda, Md.: American Society for Biochemistry and Molecular Biology 10.1074/jbc.M801499200

Roditi, Isabel; Lehane, Michael (2008). Interactions between trypanosomes and tsetse flies. Current opinion in microbiology, 11(4), pp. 345-351. London: Current Biology Ltd. 10.1016/j.mib.2008.06.006

Eberle, Andrea B.; Stalder, Lukas; Mathys, Hansruedi; Zamudio Orozco, Rodolfo; Mühlemann, Oliver (2008). Posttranscriptional Gene Regulation by Spatial Rearrangement of the 3' Untranslated Region. PLoS biology, 6(4), e92. Lawrence, Kans.: Public Library of Science 10.1371/journal.pbio.0060092

Mühlemann, Oliver (2008). Recognition of nonsense mRNA: towards a unified model. Biochemical Society transactions, 36(3), pp. 497-501. London: Portland Press 10.1042/BST0360497

Mühlemann, Oliver; Eberle, Andrea; Stalder, Lukas; Zamudio Orozco, Rodolfo (2008). Recognition and elimination of nonsense mRNA. Biochimica et biophysica acta - gene regulatory mechanisms, 1779(9), pp. 538-549. New York, N.Y.: Elsevier 10.1016/j.bbagrm.2008.06.012

Stalder, Lukas; Mühlemann, Oliver (2008). The meaning of nonsense. Trends in cell biology, 18(7), pp. 315-321. Cambridge: Elsevier Current Trends 10.1016/j.tcb.2008.04.005

Doll, Eveline; Molnar, Monika; Cuanoud, Gabriella; Octobre, Guillaume; Latypov, Vitaly; Ludin, Katja; Kohli, Jürg (2008). Cohesin and recombination proteins influence the G1-to-S transition in azygotic meiosis in Schizosaccharomyces pombe. Genetics, 180(2), pp. 727-740. Bethesda, Md.: Genetics Society of America 10.1534/genetics.108.092619

Khasanov, Fuat K.; Salakhova, Albina F.; Khasanova, Olga S.; Grishchuk, Alexandra L.; Chepurnaja, Olga V.; Korolev, Vladimir G.; Kohli, Juerg; Bashkirov, Vladimir I. (2008). Genetic analysis reveals different roles of Schizosaccharomyces pombesfr1/dds20 in meiotic and mitotic DNA recombination and repair. Current genetics, 54(4), pp. 197-211. Berlin: Springer-Verlag 10.1007/s00294-008-0212-z

Kohli, Jürg; Hartsuiker, Edgar (2008). Meiosis. In: Encyclopedia of Life Sciences. Chichester: John Wiley & Sons 10.1002/9780470015902.a0001359.pub2

Ludin, Katja; Mata, Juan; Watt, Stephen; Lehmann, Elisabeth; Bähler, Jürg; Kohli, Jürg (2008). Sites of strong Rec12/Spo11 binding in the fission yeast genome are associated with meiotic recombination and with centromeres. Chromosoma, 117(5), pp. 431-444. Heidelberg: Springer-Verlag 10.1007/s00412-008-0159-3

Octobre, Guillaume; Lorenz, Alexander; Loidl, Josef; Kohli, Jürg (2008). The Rad52 homologs Rad22 and Rti1 of Schizosaccharomyces pombe are not essential for meiotic interhomolog recombination, but are required for meiotic intrachromosomal recombination and mating-type-related DNA repair. Genetics, 178(4), pp. 2399-2412. Bethesda, Md.: Genetics Society of America 10.1534/genetics.107.085696

Parvanov, Emil; Kohli, Jürg; Ludin, Katja (2008). The Mating-Type-Related Bias of Gene Conversion in Schizosaccharomyces pombe. Genetics, 180(4), pp. 1859-1868. Bethesda, Md.: Genetics Society of America 10.1534/genetics.108.093005

Wentzingera, Laurent; Bopp, Selina; Tenorc, Hermann; Klarc, Juergen; Brun, Reto; Beck, Hans Peter; Seebeck, Thomas (2008). Cyclic nucleotide-specific phosphodiesterases of Plasmodium falciparum: PfPDE , a non-essential cGMP-specific PDE that is an integral membrane protein. International journal for parasitology, 38(14), pp. 1625-1637. Kidlington, UK: Elsevier 10.1016/j.ijpara.2008.05.016

Goulda, Matthew K.; Vu, Xuan Lan; Seebeck, Thomas; de Koning, Harry P. (2008). Propidium iodide-based methods for monitoring drug action in the kinetoplastidae: Comparison with the Alamar Blue assay. Analytical biochemistry, 382(2), pp. 87-93. San Diego, Calif.: Elsevier 10.1016/j.ab.2008.07.036

Imboden, Hans (2008). Angiotensinerge Innervierung von Blutgefässen: ein neues Konzept für das Renin-Angiotensin System. Cardiovascular medicine(11), pp. 68-70. Muttenz: EMH Swiss Medical Publishers Ltd

Asparuhova, Maria B.; Barde, Isabelle; Trono, Didier; Schranz, Karin; Schümperli, Daniel (2008). Development and characterization of a triple combination gene therapy vector inhibiting HIV-1 multiplication. Journal of gene medicine, 10(10), pp. 1059-1070. Chichester: Wiley 10.1002/jgm.1238

Ittig, Damian; Schümperli, Daniel; Leumann, Christian J. (2008). Tc-DNA modified siRNA. Nucleic Acids Symposium Series, 52(1), pp. 501-502. Oxford University Press 10.1093/nass/nrn254

Kaminsky, Ronald; Ducray, Pierre; Jung, Martin; Clover, Ralph; Rufener, Lucien; Bouvier, Jacques; Schorderet Weber, Sandra; Wenger, Andre; Wieland-Berghausen, Susanne; Goebel, Thomas; Gauvry, Noelle; Pautrat, François; Skripsky, Thomas; Froelich, Olivier; Komoin-Oka, Clarisse; Westlund, Bethany; Sluder, Ann; Mäser, Pascal (2008). A new class of anthelmintics effective against drug-resistant nematodes. Nature, 452(7184), pp. 176-180. London: Macmillan Journals Ltd. 10.1038/nature06722

Vodnala, Munender; Fijolek, Artur; Rofougaran, Reza; Mosimann, Marc; Mäser, Pascal; Hofer, Anders (2008). Adenosine Kinase Mediates High Affinity Adenosine Salvage in. Journal of biological chemistry, 283(9), pp. 5380-5388. Bethesda, Md.: American Society for Biochemistry and Molecular Biology 10.1074/jbc.M705603200

Kwak, JM; Mäser, Pascal; Schroeder, JI (2008). The Clickable Guard Cell, Version II: Interactive Model of Guard Cell Signal Transduction Mechanisms and Pathways. Arabidopsis book, 6, e0114. Rockville, Md.: American Society of Plant Biologists 10.1199/tab.0114

Vogl, C; Klein, CM; Batke, AF; Schweingruber, Martin-Ernst; Stolz, J (2008). Characterization of Thi9, a novel thiamine (Vitamin B1) transporter from Schizosaccharomyces pombe. Journal of biological chemistry, 283(12), pp. 7379-7389. Bethesda, Md.: American Society for Biochemistry and Molecular Biology 10.1074/jbc.M708275200

Yu, Min; Kumar, T.R. Santha; Nkrumah, Louis J.; Coppi, Alida; Retzlaff, Silke; Li, Celeste D.; Kelly, Brendan J.; Moura, Pedro A.; Lakshmanan, Viswanathan; Freundlich, Joel S.; Valderramos, Juan-Carlos; Vilcheze, Catherine; Siedner, Mark; Tsai, Jennifer H.-C.; Falkard, Brie; Sidhu, Amar bir Singh; Purcell, Lisa A.; Gratraud, Paul; Kremer, Laurent; Waters, Andrew P.; ... (2008). The Fatty Acid Biosynthesis Enzyme FabI Plays a Key Role in the Development of Liver-Stage Malarial Parasites. Cell host & microbe, 4(6), pp. 567-578. Cell Press 10.1016/j.chom.2008.11.001

2007

Lackner, P; Burger, C; Pfaller, K; Heussler, Volker; Helbok, R; Morandell, M; Broessner, G; Tannich, E; Schmutzhard, E; Beer, R (2007). Apoptosis in experimental cerebral malaria: spatial profile of cleaved caspase-3 and ultrastructural alterations in different disease stages. Neuropathology and Applied Neurobiology, 33(5), pp. 560-571. Wiley 10.1111/j.1365-2990.2007.00833.x

Sturm, Angelika; Heussler, Volker (2007). Live and let die: manipulation of host hepatocytes by exoerythrocytic Plasmodium parasites. Medical microbiology and immunology, 196(3), pp. 127-133. Springer 10.1007/s00430-007-0044-3

Oberholzer, Michael; Marti, Gabriela; Baresic, Mario; Kunz, Stefan; Hemphill, Andrew; Seebeck, Thomas (2007). The Trypanosoma brucei cAMP phosphodiesterases TbrPDEB1 and TbrPDEB2: flagellar enzymes that are essential for parasite virulence. FASEB journal, 21(3), pp. 720-731. Bethesda, Md.: Federation of American Societies for Experimental Biology 10.1096/fj.06-6818com

Ghisi, Marc; Kaminsky, Robert; Mäser, Pascal (2007). Phenotyping and genotyping of Haemonchus contortus isolates reveals a new putative candidate mutation for benzimidazole resistance in nematodes. Veterinary parasitology, 144(3-4), pp. 313-320. Amsterdam: Elsevier 10.1016/j.vetpar.2006.10.003

Güttinger, Andreas; Schwab, Claudia; Morand, Sabine; Roditi, Isabel; Vassella, Erik (2007). A mitogen-activated protein kinase of Trypanosoma brucei confers resistance to temperature stress. Molecular and biochemical parasitology, 153(2), pp. 203-206. Amsterdam: Elsevier 10.1016/j.molbiopara.2007.02.001

Marquis, Julien; Meyer, Kathrin; Angehrn, Larissa; Kämpfer, Sacha; Rothen-Rutishauser, Barbara; Schümperli, Daniel (2007). Spinal muscular atrophy: SMN2 pre-mRNA splicing corrected by a U7 snRNA derivative carrying a splicing enhancer sequence. Molecular therapy, 15(8), pp. 1479-1486. New York, N.Y.: Nature Publishing Group 10.1038/sj.mt.6300200

Bellac, Caroline L; Coimbra, Roney S; Simon, Franziska; Imboden, Johann; Leib, Stephen L. (2007). Gene and protein expression of galectin-3 and galectin-9 in experimental pneumococcal meningitis. Neurobiology of disease, 28(2), pp. 175-183. Amsterdam: Elsevier 10.1016/j.nbd.2007.07.005

Levine, Sylvia; Sunday, Suchot; Dorig, Ruth; Suter, Beat; Lasko, Paul (2007). Genetic maps of the proximal half of chromosome arm 2L of Drosophila melanogaster. Genome, 50(2), pp. 137-41. Ottawa: National Research Council of Canada 10.1139/G06-149

Vazquez-Pianzola, Paula; Hernandez, Greco; Suter, Beat; Rivera-Pomar, Ronaldo (2007). Different modes of translation for hid, grim and sickle mRNAs in Drosophila. Cell death and differentiation, 14(2), pp. 286-295. Basingstoke: Nature Publishing Group 10.1038/sj.cdd.4401990

Burkard, Gabriela; Fragoso, Cristina; Roditi, Isabel (2007). Highly efficient stable transformation of bloodstream forms of Trypanosoma brucei. Molecular and biochemical parasitology, 153(2), pp. 220-223. Amsterdam: Elsevier 10.1016/j.molbiopara.2007.02.008

Spoerri, Iris; Chadwick, Ruth; Renggli, Christina; Matthews, Keith; Roditi, Isabel; Burkard, Gabriela (2007). Role of the stage-regulated nucleoside transporter TbNT10 in differentiation and adenosine uptake in Trypanosoma brucei. Molecular and biochemical parasitology, 154(1), pp. 110-4. Amsterdam: Elsevier 10.1016/j.molbiopara.2007.04.006

Urwyler, Simon; Studer, Erwin; Renggli, Christina; Roditi, Isabel (2007). A family of stage-specific alanine-rich proteins on the surface of epimastigote forms of Trypanosoma brucei. Molecular microbiology, 63(1), pp. 218-28. Oxford: Blackwell Science 10.1111/j.1365-2958.2006.05492.x

Mühlemann, Oliver; Akusjarvi, Goran (2007). Preparation of soluble extracts from adenovirus-infected cells for studies of RNA splicing. Methods in molecular medicine, 131, pp. 33-46. Totowa, N.J.: Humana Press

Stalder, Lukas; Eberle, Andrea; Mühlemann, Oliver (2007). Quality control of gene expression: recognition of nonsense mRNAs prevents synthesis of truncated proteins. BioForum Europe(3), pp. 21-23. Darmstadt: GIT-Verlag

Stalder, Lukas; Mühlemann, Oliver (2007). Transcriptional silencing of nonsense codon-containing immunoglobulin micro genes requires translation of its mRNA. Journal of biological chemistry, 282(22), pp. 16079-16085. Bethesda, Md.: American Society for Biochemistry and Molecular Biology 10.1074/jbc.M610595200

Sakem, Benjamin; Kohli, Jürg (2007). The end1 gene of Schizosaccharomyces pombe coding for a DNase is identical with the pnu1 gene coding for an RNase. Yeast, 24(1), pp. 11-6. Chichester: Wiley 10.1002/yea.1427

Oberholzer, Michael; Bregy, Patrick; Marti, Gabriela; Minca, Mihaela; Peier, Mihaela; Seebeck, Thomas (2007). Trypanosomes and mammalian sperm: one of a kind? Trends in parasitology, 23(2), pp. 71-7. Oxford: Elsevier Current Trends 10.1016/j.pt.2006.12.002

Wang, Huanchen; Yan, Zier; Geng, Jie; Kunz, Stefan; Seebeck, Thomas; Ke, Hengming (2007). Crystal structure of the Leishmania major phosphodiesterase LmjPDEB1 and insight into the design of the parasite-selective inhibitors. Molecular microbiology, 66(4), pp. 1029-38. Oxford: Blackwell Science 10.1111/j.1365-2958.2007.05976.x

Urwyler, Olivier; Zhang, Li; Li, Xiaoming; Imboden, Johann; Suter, Beat (2007). Tissue-dependent subcellular localization of Drosophila arginine methyl-transferase 4 (DART4), a coactivator whose overexpression affects neither viability nor differentiation. Differentiation, 75(8), pp. 757-65. Oxford: Elsevier 10.1111/j.1432-0436.2007.00175.x

Asparuhova, Maria B.; Marti, Gabriela; Liu, Songkai; Serhan, Fatima; Trono, Didier; Schümperli, Daniel (2007). Inhibition of HIV-1 multiplication by a modified U7 snRNA inducing Tat and Rev exon skipping. Journal of gene medicine, 9(5), pp. 323-334. Chichester: Wiley 10.1002/jgm.1027

Scholl, Raphael; Marquis, Julien; Meyer, Kathrin; Schümperli, Daniel (2007). Spinal Muscular Atrophy: position and functional importance of the branch site preceding SMN exon 7. RNA biology, 4(1), pp. 34-37. Georgetown, Tex.: Landes Bioscience 10.4161/rna.4.1.4534

Al-Salabi, Mohammed; Wallace, Lynsey; Lüscher, Alexandra; Mäser, Pascal; Candlish, Denise; Rodenko, Boris; Gould, Matthew; Jabeen, Ishrat; Ajith, Sreekantan; de Koning, Harry (2007). Molecular interactions underlying the unusually high adenosine affinity of a novel Trypanosoma brucei nucleoside transporter. Molecular pharmacology, 71(3), pp. 921-929. Bethesda, Md.: American Society for Pharmacology and Experimental Therapeutics 10.1124/mol.106.031559

Bernhard, Sonja; Nerima, Barbara; Mäser, Pascal; Brun, Reto (2007). Melarsoprol- and pentamidine-resistant Trypanosoma brucei rhodesiense populations and their cross-resistance. International journal for parasitology, 37(13), pp. 1443-8. Kidlington, UK: Elsevier 10.1016/j.ijpara.2007.05.007

Bridges, Daniel; Gould, Matthew; Nerima, Barbara; Mäser, Pascal; Burchmore, Richard; de Koning, Harry (2007). Loss of the high-affinity pentamidine transporter is responsible for high levels of cross-resistance between arsenical and diamidine drugs in African trypanosomes. Molecular pharmacology, 71(4), pp. 1098-108. Bethesda, Md.: American Society for Pharmacology and Experimental Therapeutics 10.1124/mol.106.031351

Fankhauser, Niklaus; Nguyen-Ha, Tien-Minh; Adler, Joël; Mäser, Pascal (2007). Surface antigens and potential virulence factors from parasites detected by comparative genomics of perfect amino acid repeats. Proteome science, 5(December), p. 20. London: BioMed Central 10.1186/1477-5956-5-20

Gierth, Markus; Mäser, Pascal (2007). Potassium transporters in plants--involvement in K+ acquisition, redistribution and homeostasis. FEBS letters, 581(12), pp. 2348-56. Amsterdam: Elsevier 10.1016/j.febslet.2007.03.035

Lüscher, Alexandra; de Koning, Harry; Mäser, Pascal (2007). Chemotherapeutic strategies against Trypanosoma brucei: drug targets vs. drug targeting. Current pharmaceutical design, 13(6), pp. 555-67. Hilversum: Bentham Science Publishers 10.2174/138161207780162809

Lüscher, Alexandra; Önal, Pinar; Schweingruber, Anne-Marie; Mäser, Pascal (2007). Adenosine kinase of Trypanosoma brucei and its role in susceptibility to adenosine antimetabolites. Antimicrobial agents and chemotherapy, 51(11), pp. 3895-901. Washington, D.C.: American Society for Microbiology 10.1128/AAC.00458-07

Maina, Naomi; Maina, Kagira Joseph; Mäser, Pascal; Brun, Reto (2007). Genotypic and phenotypic characterization of Trypanosoma brucei gambiense isolates from Ibba, South Sudan, an area of high melarsoprol treatment failure rate. Acta tropica, 104(2-3), pp. 84-90. Basel: Elsevier 10.1016/j.actatropica.2007.07.007

Maina, Naomi; Oberle, Michael; Otieno, Charles; Kunz, Christina; Mäser, Pascal; Ndung'u, Joseph; Brun, Reto (2007). Isolation and propagation of Trypanosoma brucei gambiense from sleeping sickness patients in south Sudan. Transactions of the Royal Society of Tropical Medicine and Hygiene, 101(6), pp. 540-546. Amsterdam: Royal Society of Tropical Medicine and Hygiene 10.1016/j.trstmh.2006.11.008

Annaheim, M; Lanzrein, Beatrice (2007). Genome organization of the Chelonus inanitus polydnavirus: excision sites, spacers and abundance of proviral and excised segments. Journal of general virology, 88(2), pp. 450-457. Reading: Society for General Microbiology 10.1099/vir.0.82396-0

Meuter, S; Schaerli, P; Roos, RS; Brandau, O; Bösl, MR; von Andrian, UH; Moser, B (2007). Murine CXCL14 is dispensable for dendritic cell function and localization within peripheral tissues. Molecular and cellular biology, 27(3), pp. 983-992. Washington, D.C.: American Society for Microbiology 10.1128/MCB.01648-06

Moser, Bernhard; Eberl, M (2007). Gammadelta T cells: novel initiators of adaptive immunity. Immunological reviews, 215(1), pp. 89-102. Oxford: Wiley-Blackwell 10.1111/j.1600-065X.2006.00472.x

Weber, B; Annaheim, M; Lanzrein, Beatrice (2007). Transcriptional analysis of polydnaviral genes in the course of parasitization reveals segment-specific patterns. Archives of insect biochemistry and physiology, 66(1), pp. 9-22. New York, N.Y.: Wiley-Liss 10.1002/arch.20190

2006

Sturm, Angelika; Amino, Rogerio; van de Sand, Claudia; Regen, Tommy; Retzlaff, Silke; Rennenberg, Annika; Krueger, Andreas; Pollok, Jörg-Matthias; Menard, Robert; Heussler, Volker (2006). Manipulation of host hepatocytes by the malaria parasite for delivery into liver sinusoids. Science, 313(5791), pp. 1287-1290. American Association for the Advancement of Science 10.1126/science.1129720

Heussler, Volker; Doerig, Christian (2006). In vivo imaging enters parasitology. Trends in parasitology, 22(5), pp. 192-195. Elsevier Current Trends 10.1016/j.pt.2006.03.001

Tartz, Susanne; Kamanova, Jana; Simsova, Marcela; Sebo, Peter; Bolte, Stefanie; Heussler, Volker; Fleischer, Bernhard; Jacobs, Thomas (2006). Immunization with a circumsporozoite epitope fused to Bordetella pertussis adenylate cyclase in conjunction with cytotoxic T-lymphocyte-associated antigen 4 blockade confers protection against Plasmodium berghei liver-stage malaria. Infection and immunity, 74(4), pp. 2277-2285. American Society for Microbiology 10.1128/IAI.74.4.2277-2285.2006

Lackner, P; Beer, R; Heussler, Volker; Goebel, G; Rudzki, D; Helbok, R; Tannich, E; Schmutzhard, E (2006). Behavioural and histopathological alterations in mice with cerebral malaria. Neuropathology and Applied Neurobiology, 32(2), pp. 177-188. Wiley 10.1111/j.1365-2990.2006.00706.x

Domenicali Pfister, Debora; Burkard, Gabriela; Morand, Sabine; Renggli, Christina Kunz; Roditi, Isabel; Vassella, Erik (2006). A Mitogen-activated protein kinase controls differentiation of bloodstream forms of Trypanosoma brucei. Eukaryotic cell, 5(7), pp. 1126-35. Washington, D.C.: American Society for Microbiology ASM 10.1128/EC.00094-06

Utz, Silvia; Roditi, Isabel; Kunz Renggli, Christina; Almeida, Igor C; Acosta-Serrano, Alvaro; Bütikofer, Peter (2006). Trypanosoma congolense procyclins: unmasking cryptic major surface glycoproteins in procyclic forms. Eukaryotic cell, 5(8), pp. 1430-40. Washington, D.C.: American Society for Microbiology ASM 10.1128/EC.00067-06

Afework, Yohannes; Mäser, Pascal; Etschmann, Benjamin; Samson Himmelstjerna, Georg; Zessin, Karl-Hans; Clausen, Peter-Henning (2006). Rapid identification of isometamidium-resistant stocks of Trypanosoma b. brucei by PCR - RFLP. Parasitology research, 99(3), pp. 253-261. Berlin: Springer 10.1007/s00436-006-0141-z

Luescher, Alexandra; Nerima, Barbara; Maeser, Pascal (2006). Combined contribution of TbAT1 and TbMRPA to drug resistance in Trypanosoma brucei (Short communication). Molecular and biochemical parasitology, 150(2), pp. 364-366. Amsterdam: Elsevier 10.1016/j.molbiopara.2006.07.01.010

Platten, J. Damien; Cotsaftis, Olivier; Berthomieu, Pierre; Bohnert, Hans; Davenport, Romola; Fairbairn, David; Horie, Tomoaki; Leigh, Roger; Lin, Hong-Xuan; Luan, Sheng; Maeser, Pascal; Pantoja, Omar; Rodriguez-Navarro, Alonso; Schachtman, Daniel; Schroeder, Julian; Sentenac, Hervé; Uozumi, Nobuyuki; Very, Anne-Aliéor; Zhu, Jian-Kang; Dennis, Elizabeth; ... (2006). Nomenclature for HKT transporters, key determinants of plant salinity tolerance (Update Letters). Trends in Plant Science, 11(8), pp. 372-374. Oxford: Elsevier Current Trends 10.1016/j.tplants.2006.06.001

Stoffel, Sabine; Rodenko, Boris; Schweingruber, Anne-Marie; Mäser, Pascal; de Koning, Harry; Schweingruber, Ernst (2006). Biosynthesis and uptake of thiamine (vitamin B1) in bloodstream from Trypanosoma brucei brucei and interference of the vitamin with melarsen oxide activity. International journal for parasitology, 36(2), pp. 229-236. Kidlington, UK: Elsevier 10.1016/j.ijpara.2005.10.003

Lorenz, Alexander; Estreicher, Anna; Kohli, Jürg; Loidl, Josef (2006). Meiotic recombination takes place in the spatial context of linear elements in Schizosaccharomyces pombe. Chromosoma, 115(4), pp. 330-340. Heidelberg: Springer 10.1007/s00412-006-0053-9

Claussen, Maike; Koch, Rafael; Jin, Zhao-Yang; Suter, Beat (2006). Functional characterization of Drosophila Translin and Trax. Genetics, 174(3), pp. 1337-1347. Bethesda, Md.: Genetics Society of America 10.1534/genetics.106.063016

Buehler, Marc; Steiner, Silvia; Mohn, Fabio; Paillusson, Alexandra; Mühlemann, Oliver (2006). EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3' UTR length (Brief Communications). Nature structural & molecular biology, 13(5), pp. 462-464. New York, N.Y.: Nature Publishing Group 10.1038/nsmb1081

Newbury, Sarah; Muehlemann, Oliver; Stoecklin, Georg (2006). Turnover in the Alps; an mRNA perspective. Review of EMBO Workshop on Mechanisms and Regulation of mRNA Turnover. EMBO reports, 7(2), pp. 143-148. London: Nature Publishing Group 10.1038/sj.embor.7400628

Haenni, Simon; Kunz Renggli, Christina; Fragoso, Cristina; Oberle, Michael; Roditi, Isabel (2006). The procyclin-associated genes of Trypanosoma brucei are not essential for cyclical transmission by tsetse. Molecular and biochemical parasitology, 150(2), pp. 144-156. Amsterdam: Elsevier 10.1016/j.molbiopara.2006.07.005

Alibu, Vincent; Richter, Christina; Voncken, Frank; Marti, Gabriela; Shahi, Sanjay; Kunz Rengli, Christina; Seebeck, Thomas; Brun, Reto; Clayton, Christine (2006). The role of Trypanosoma brucei MRPA in melarsoprol susceptibility. Molecular and biochemical parasitology, 146(1), pp. 38-44. Amsterdam: Elsevier 10.1016/j.molbiopara.2005.10.016

Johner, Andrea; Kunz, Stefan; Linder, Markus; Shakur, Yasmin; Seebeck, Thomas (2006). Cyclic nucleotide specific phosphodiesterases of Leishmania major. BMC microbiology, 6(25), [1-13]. London: BioMed Central 10.1186/1471-2180-6-25

Wedekind, Claus; Seebeck, Thomas; Bettens, Florence; Paepke, Alexander (2006). The intensity of human body odours and the MHC - should we expect a link ? Evolutionary psychology, 4, pp. 85-94. Cleckheaton: The Human Nature Review

Wentzinger, Laurent; Seebeck, Thomas (2006). Protozoal phosphodiesterases. In: Beavo, Joseph A.; Francis, Sharron H.; Houslay, Miles D. (eds.) Cyclic Nucleotide Phosphodiesterases in Health and Disease (pp. 277-300). Boca Raton: CRC Press

Woost, Philip; Kolb, Robert; Finesilver, Margaret; Mackraj, Irene; Imboden, Johann; Coffman, Thomas; Hopfer, Ulrich (2006). Strategy for the development of a matched set of transport-competent, angiotensin receptor-deficient proximal tubule cell lines. In vitro cellular & developmental biology - animal, 42(7), pp. 189-200. Columbia, Md.: Springer 10.1290/0511076.1

Zhou, Jin; Pavel, Jaroslav; Macova, Miroslava; Yu, Zu-Xi; Imboden, Johann; Ge, Linna; Nishioku, Tsuyoshi; Dou, Jingtao; Delgiacco, Elizabeth; Saavedra, Juan (2006). AT1 receptor blockade regulates the locale Angiotensin II system in cerebral microvessels from spontaneously hypertensive rats. Stroke, 37(5), pp. 1271-1276. Baltimore, Md.: Lippincott Williams & Wilkins 10.1161/01.STR.0000217404.64352.d7

Ebert, Lisa; Meuter, Simone; Moser, Bernhard (2006). Homing and function of human skin gammadelta T cells and NK cells: relevance for tumor surveillance. Journal of immunology, 176(7), pp. 4331-4336. Bethesda, Md.: American Association of Immunologists

Moser, Bernhard (2006). T-cell memory: the importance of chemokine-mediated cell attraction. Current Biology, 16(13), R504-R507. Cambridge, Mass.: Cell Press 10.1016/j.cub.2006.06.008

Moser, Bernhard; Brandes, Marlène (2006). Gammadelta T cells: an alternative type of professional APC. Trends in immunology, 27(3), pp. 112-118. Oxford: Elsevier Current Trends 10.1016/j.it.2006.01.002

Schaerli, Patrick; Ebert, Lisa; Moser, Bernhard (2006). Comment on "The vast majority of CLA+ T cells are resident in normal skin". Journal of immunology, 77(3), pp. 1375-1376. Bethesda, Md.: American Association of Immunologists

Heussler, Volker; Sturm, A; Langsley, G (2006). Regulation of host cell survival by intracellular Plasmodium and Theileria parasites. Parasitology, 132(Suppl S1), S49-S60. Cambridge University Press 10.1017/S0031182006000850

2005

van de Sand, Claudia; Horstmann, Sebastian; Schmidt, Anja; Sturm, Angelika; Bolte, Stefanie; Krueger, Andreas; Lütgehetmann, Marc; Pollok, Jörg-Matthias; Libert, Claude; Heussler, Volker (2005). The liver stage of Plasmodium berghei inhibits host cell apoptosis. Molecular microbiology, 58(3), pp. 731-742. Blackwell Science 10.1111/j.1365-2958.2005.04888.x

Azzouz, Teldja N.; Pillai, Ramesh S.; Däpp, Christoph; Chari, Ashwin; Meister, Gunter; Kambach, Christian; Fischer, Utz; Schümperli, Daniel (2005). Toward an assembly line for U7 snRNPs: interactions of U7-specific Lsm proteins with PRMT5 and SMN complexes. Journal of biological chemistry, 280(41), pp. 34435-34440. American Society for Biochemistry and Molecular Biology 10.1074/jbc.M505077200

van Dijk, Melissa R; Douradinha, Bruno; Franke-Fayard, Blandine; Heussler, Volker; van Dooren, Maaike W; van Schaijk, Ben; van Gemert, Geert-Jan; Sauerwein, Robert W; Mota, Maria M; Waters, Andrew P; Janse, Chris J (2005). Genetically attenuated, P36p-deficient malarial sporozoites induce protective immunity and apoptosis of infected liver cells. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 102(34), pp. 12194-12199. National Academy of Sciences NAS 10.1073/pnas.0500925102

Xu, Hongzhi; Pillai, Ramesh S.; Azzouz, Teldja N.; Shpargel, Karl B.; Kambach, Christian; Hebert, Michael D.; Schümperli, Daniel; Matera, A. Gregory (2005). The C-terminal domain of coilin interacts with Sm proteins and U snRNPs. Chromosoma, 114(3), pp. 155-166. Springer 10.1007/s00412-005-0003-y

Lindenthal, C; Weich, N; Chia, Y S; Heussler, Volker; Klinkert, M Q (2005). The proteasome inhibitor MLN-273 blocks exoerythrocytic and erythrocytic development of Plasmodium parasites. Parasitology, 131(Pt 1), pp. 37-44. Cambridge University Press 10.1017/S003118200500747X

Kaeslin, Martha; Wehrle, Irene; Grossniklaus-Bürgin, Christa; Wyler, Toni; Guggisberg, Ursula; Schittny, Johannes; Lanzrein, Beatrice Constance (2005). Stage-dependent strategies of host invasion in the egg-larval parasitoid Chelonus inanitus. Journal of insect physiology, 51(3), pp. 287-296. Elsevier 10.1016/j.jinsphys.2004.11.015

Cavey, Matthieu; Hijal, Sirine; Zhang, Xiaolan; Suter, Beat (2005). Drosophila valois encodes a divergent WD protein that is required for Vasa localization and Oskar protein accumulation. Development, 132(3), pp. 459-468. Company of Biologists Limited 10.1242/dev.01590

Gorgoni, Barbara; Andrews, Stuart; Schaller, André; Schümperli, Daniel; Gray, Nicola K; Müller, Berndt (2005). The stem-loop binding protein stimulates histone translation at an early step in the initiation pathway. RNA - a publication of the RNA Society, 11(7), pp. 1030-1042. Woodbury, N.Y.: Cold Spring Harbor Laboratory Press 10.1261/rna.7281305

Azzouz, Teldja N.; Gruber, Andreas; Schümperli, Daniel (2005). U7 snRNP-specific Lsm11 protein: dual binding contacts with the 100 kDa zinc finger processing factor (ZFP100) and a ZFP100-independent function in histone RNA 3' end processing. Nucleic acids research, 33(7), pp. 2106-2117. Oxford University Press 10.1093/nar/gki516

Claussen, Maike; Suter, Beat (2005). BicD Dependent Localization Processes: from Drosophila Development to Human Cell Biology. Annals of anatomy - Anatomischer Anzeiger, 187(5-6), pp. 539-553. Elsevier 10.1016/j.aanat.2005.07.004

Houalla, Tarek; Vuong, Dac Hien; Ruan, Wenjing; Suter, Beat; Rao, Yong (2005). The Ste20-like kinase misshapen functions together with Bicaudal-D and dynein in driving nuclear migration in the developing drosophila eye. Mechanisms of development, 122(1), pp. 97-108. Elsevier 10.1016/j.mod.2004.08.005

Urwyler, Simon; Vassella, Erik; Abbeele, Jan Van Den; Kunz Renggli, Christina; Blundell, Pat; Barry, J. David; Roditi, Isabel (2005). Expression of Procyclin mRNAs during Cyclical Transmission of Trypanosoma brucei. PLoS pathogens, 1(3), e22. Public Library of Science 10.1371/journal.ppat.0010022

Paillusson, Alexandra; Hirschi, Nadine; Vallan, Claudio; Azzalin, Claus M.; Mühlemann, Oliver (2005). A GFP-based reporter system to monitor nonsense-mediated mRNA decay. Nucleic acids research, 33(6), e54-e54. Oxford University Press 10.1093/nar/gni052

Fankhauser, Niklaus; Mäser, Pascal (2005). Identification of GPI anchor attachment signals by a Kohonen self-organizing map. Bioinformatics, 21(9), pp. 1846-1852. Oxford University Press 10.1093/bioinformatics/bti299

Doll, Eveline; Molnar, Monika; Hiraoka, Yasushi; Kohli, Jürg (2005). Characterization of rec15 , an early meiotic recombination gene in Schizosaccharomyces pombe. Current genetics, 48(5), pp. 323-333. Springer-Verlag 10.1007/s00294-005-0024-3

2004

Huber, Stephan M; Duranton, Christophe; Henke, Guido; Van De Sand, Claudia; Heussler, Volker; Shumilina, Ekaterina; Sandu, Ciprian D; Tanneur, Valerie; Brand, Verena; Kasinathan, Ravi S; Lang, Karl S; Kremsner, Peter G; Hübner, Christian A; Rust, Marco B; Dedek, Karin; Jentsch, Thomas J; Lang, Florian (2004). Plasmodium induces swelling-activated ClC-2 anion channels in the host erythrocyte. Journal of biological chemistry, 279(40), pp. 41444-41452. American Society for Biochemistry and Molecular Biology 10.1074/jbc.M407618200

Christopher, Schuetze; Peters, Michelle; Jia-Jen, Duong; Matthieu, Cavey; Dörig, Ruth; Lasko, Paul; Suter, Beat (2004). Map positions of third chromosomal female sterile and lethal mutations of Drosophila melanogaster. Genome, 47(5), pp. 832-838. National Research Council of Canada 10.1139/g04-052

Gianinazzi, Christian; Grandgirard, Denis; Simon, Franziska; Imboden, Hans; Joss, Philipp; Täuber, Martin G.; Leib, Stephen (2004). Apoptosis of hippocampal neurons in organotypic slice culture models: direct effect of bacteria revisited. Journal of neuropathology and experimental neurology, 63(6), pp. 610-617. Lippincott Williams & Wilkins

Waldvogel, A S; Lepage, M-F; Zakher, Anthony; Reichel, M P; Eicher, R; Heussler, Volker (2004). Expression of interleukin 4, interleukin 4 splice variants and interferon gamma mRNA in calves experimentally infected with Fasciola hepatica. Veterinary immunology and immunopathology, 97(1-2), pp. 53-63. Elsevier 10.1016/j.vetimm.2003.08.002

Saeftel, Michael; Krueger, Andreas; Arriens, Sandra; Heussler, Volker; Racz, Paul; Fleischer, Bernhard; Brombacher, Frank; Hoerauf, Achim (2004). Mice deficient in interleukin-4 (IL-4) or IL-4 receptor alpha have higher resistance to sporozoite infection with Plasmodium berghei (ANKA) than do naive wild-type mice. Infection and immunity, 72(1), pp. 322-331. American Society for Microbiology

Ittig, D.; Liu, Shi-Xia; Renneberg, Dorte; Schümperli, Daniel; Leumann, Christian (2004). Nuclear antisense effects in cyclophilin A pre-mRNA splicing by oligonucleotides: A comparison of tricyclo-DNA with LNA. Nucleic acids research, 32(1), pp. 346-353. Oxford University Press 10.1093/nar/gkh187

Liu, Songkai; Asparuhova, Maria; Brondani, Vincent; Ziekau, Ingrid; Klimkait, Thomas; Schümperli, Daniel (2004). Inhibition of HIV-1 multiplication by antisense U7 snRNAs and siRNAs targeting cyclophilin A. Nucleic acids research, 32(12), pp. 3752-3759. Oxford University Press 10.1093/nar/gkh715

Schümperli, Daniel; Pillai, R S (2004). The special Sm core structure of the U7 snRNP: far-reaching significance of a small nuclear ribonucleoprotein. Cellular and molecular life sciences, 61(19-20), pp. 2560-2570. Birkhäuser-Verlag; www.birkhauser.ch 10.1007/s00018-004-4190-0

Asparuhova, Maria B.; Kole, Ryszard; Schümperli, Daniel (2004). Antisense derivatives of U7 and other small nuclear RNAs as tools to modify pre-mRNA splicing patterns. Gene Therapy and Regulation, 2(4), pp. 321-349. VSP International Science Publishers 10.1163/1568558043967472

Alarco, Anne-Marie; Marcil, Anne; Chen, Jian; Suter, Beat; Thomas, David; Whiteway, Malcolm (2004). Immune-Deficient Drosophila melanogaster: A Model for the Innate Immune Response to Human Fungal Pathogens. Journal of immunology, 172(9), pp. 5622-5628. American Association of Immunologists 10.4049/jimmunol.172.9.5622

BOULANGER, Marie-Chloé; MIRANDA, Tina Branscombe; Steven, CLARKE; DI FRUSCIO, Marco; Suter, Beat; LASKO, Paul; RICHARD, Stéphane (2004). Characterization of the Drosophila protein arginine methyltransferases DART1 and DART4. Biochemical journal, 379(Pt2), pp. 283-289. Portland Press 10.1042/BJ20031176

Bühler, Marc; Paillusson, Alexandra; Mühlemann, Oliver (2004). Efficient downregulation of immunoglobulin μ mRNA with premature translation-termination codons requires the 5′-half of the VDJ exon. Nucleic acids research, 32(11), pp. 3304-3315. Oxford University Press 10.1093/nar/gkh651

Grishchuk, Alexandra L.; Kraehenbuehl, Rolf; Molnar, Monika; Fleck, Oliver; Kohli, Juerg (2004). Genetic and cytological characterization of the RecA-homologous proteins Rad51 and Dmc1 of Schizosaccharomyces pombe. Current genetics, 44(6), pp. 317-328. Springer-Verlag 10.1007/s00294-003-0439-7

Marti, T. M.; Fleck, Oliver (2004). DNA repair nucleases. Cellular and molecular life sciences, 61(3), pp. 336-354. SP Birkhäuser Verlag Basel 10.1007/s00018-003-3223-4

2003

Azzouz, Teldja N; Schümperli, Daniel (2003). Evolutionary conservation of the U7 small nuclear ribonucleoprotein in Drosophila melanogaster. RNA - a publication of the RNA Society, 9(12), pp. 1532-1541. Cold Spring Harbor Laboratory Press 10.1261/rna.5143303

Pillai, Ramesh S; Grimmler, Matthias; Meister, Gunter; Will, Cindy L; Lührmann, Reinhard; Fischer, Utz; Schümperli, Daniel (2003). Unique Sm core structure of U7 snRNPs: assembly by a specialized SMN complex and the role of a new component, Lsm11, in histone RNA processing. Genes & development, 17(18), pp. 2321-2333. Cold Spring Harbor Laboratory Press 10.1101/gad.274403

Chen, Jian; Larochelle, Stéphane; Li, Xiaoming; Suter, Beat (2003). Xpd/Ercc2 regulates CAK activity and mitotic progression. Nature, 424(6945), pp. 228-232. Macmillan Journals Ltd. 10.1038/nature01746

Gianinazzi, Christian; Grandgirard, Denis; Imboden, Hans; Egger, Lotti; Meli, Damian N; Bifrare, Yoeng-Delphine; Joss, Philipp; Täuber, Martin G.; Borner, Christoph; Leib, Stephen (2003). Caspase-3 mediates hippocampal apoptosis in pneumococcal meningitis. Acta neuropathologica, 105(5), pp. 499-507. Springer 10.1007/s00401-003-0672-7

Brun, C; Suter, D; Pauli, C; Dunant, P; Lochmüller, H; Burgunder, J M; Schümperli, Daniel; Weis, J (2003). U7 snRNAs induce correction of mutated dystrophin pre-mRNA by exon skipping. Cellular and molecular life sciences, 60(3), pp. 557-566. Springer

Masrouha, Nisrine; Yang, Long; Hijal, Sirine; Larochelle, Stéphane; Suter, Beat (2003). The Drosophila chk2 gene loki is essential for embryonic DNA double-strand-break checkpoints induced in S phase or G2. Genetics, 163(3), pp. 973-982. Genetics Society of America

Bifrare, Yoeng-Delphine; Gianinazzi, Christian; Imboden, Hans; Leib, Stephen L; Täuber, Martin G. (2003). Bacterial meningitis causes two distinct forms of cellular damage in the hippocampal dentate gyrus in infant rats. Hippocampus, 13(4), pp. 481-488. Wiley-Liss 10.1002/hipo.10142

Schwartz, Brian E.; Larochelle, Stephane; Suter, Beat; Lis, John T (2003). Cdk7 is required for full activation of Drosophila heat shock genes and RNA polymerase II phosphorylation in vivo. Molecular and cellular biology, 23(19), pp. 6876-6886. American Society for Microbiology 10.1128/MCB.23.19.6876-6886.2003

Chen, Jian; Suter, Beat (2003). Xpd, a structural bridge and a functional link. Cell cycle, 2(6), pp. 503-506. Landes Bioscience 10.4161/cc.2.6.558

Naula, N.; Hilti, N.; Schweingruber, A. M.; Schweingruber, Martin-Ernst (2003). Cordycepin in Schizosaccharomyces pombe : effects on the wild type and phenotypes of mutants resistant to the drug. Current genetics, 43(6), pp. 400-406. Springer-Verlag 10.1007/s00294-003-0413-4

2002

Schümperli, Daniel (2002). Megatrends in medicine. In: Leuthold, M.; Leuenberger, H.; Weibel, E.R. (eds.) Megatrends – rise and fall of megatrends in science. Basel: Schwabe

Waldvogel, Andreas S; Zakher, Anthony; Guionaud, Christophe T; Fernandez, Paula; Heussler, Volker (2002). Regulation of bovine IL-12R beta 2 subunit mRNA expression in bovine lymph node cells. Gene, 289(1-2), pp. 61-67. Elsevier 10.1016/S0378-1119(02)00464-X

Pettitt, Jonathan; Crombie, Catriona; Schümperli, Daniel; Müller, Berndt (2002). The Caenorhabditis elegans histone hairpin-binding protein is required for core histone gene expression and is essential for embryonic and postembryonic cell division. Journal of cell science, 115(Pt 4), pp. 857-866. Company of Biologists Limited

Zanier, Katia; Luyten, Ingrid; Crombie, Catriona; Muller, Berndt; Schümperli, Daniel; Linge, Jens P; Nilges, Michael; Sattler, Michael (2002). Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression. RNA - a publication of the RNA Society, 8(1), pp. 29-46. Cold Spring Harbor Laboratory Press

Wyder, Stefan; Tschannen, Adrian; Hochuli, Anita; Gruber, Andreas; Saladin, Verena; Zumbach, Sonja; Lanzrein, Beatrice Constance (2002). Characterization of Chelonus inanitus polydnavirus segments: sequences and analysis, excision site and demonstration of clustering. Journal of general virology, 83(Pt 1), pp. 247-256. Society for General Microbiology 10.1099/0022-1317-83-1-247

Heussler, Volker; Rottenberg, S; Schwab, R; Küenzi, P; Fernandez, PC; McKellar, S; Shiels, B; Chen, ZJ; Orth, K; Wallach, D; Dobbelaere, Dirk, (2002). Hijacking of host cell IKK signalosomes by the transforming parasite Theileria. Science, 5595(298), pp. 1033-1036. Washington, D.C.: American Association for the Advancement of Science 10.1126/science.1075462

Rottenberg, S; Schmuckli-Maurer, J; Grimm, S; Heussler, Volker; Dobbelaere, Dirk, (2002). Characterization of the bovine IkappaB kinases (IKK)alpha and IKKbeta, the regulatory subunit NEMO and their substrate IkappaBalpha. Gene, 299(1-2), pp. 293-300. Amsterdam: Elsevier 10.1016/S0378-1119(02)01011-9

Renneberg, Dorte; Bouliong, Emilie; Reber, Ulrich; Schümperli, Daniel; Leumann, Christian J. (2002). Antisense properties of tricyclo-DNA. Nucleic acids research, 30(13), pp. 2751-2757. Oxford University Press 10.1093/nar/gkf412

2001

Pillai, R S; Will, C L; Lührmann, R; Schümperli, Daniel; Müller, B (2001). Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain Lsm10, a new 14 kDa Sm D1-like protein. EMBO journal, 20(19), pp. 5470-5479. Nature Publishing Group 10.1093/emboj/20.19.5470

Heussler, Volker; Küenzi, P; Rottenberg, S (2001). Inhibition of apoptosis by intracellular protozoan parasites. International journal for parasitology, 31(11), pp. 1166-1176. Elsevier 10.1016/S0020-7519(01)00271-5

Heussler, Volker; Küenzi, P; Fraga, F; Schwab, R A; Hemmings, B A; Dobbelaere, D A (2001). The Akt/PKB pathway is constitutively activated in Theileria-transformed leucocytes, but does not directly control constitutive NF-kappaB activation. Cellular microbiology, 3(8), pp. 537-550. Blackwell 10.1046/j.1462-5822.2001.00134.x

2000

Waldvogel, A S; Hediger-Weithaler, B M; Eicher, R; Zakher, Anthony; Zarlenga, D S; Gasbarre, L C; Heussler, Volker (2000). Interferon-gamma and interleukin-4 mRNA expression by peripheral blood mononuclear cells from pregnant and non-pregnant cattle seropositive for bovine viral diarrhea virus. Veterinary immunology and immunopathology, 77(3-4), pp. 201-212. Elsevier 10.1016/S0165-2427(00)00240-3

Michel, F; Schümperli, Daniel; Müller, B (2000). Specificities of Caenorhabditis elegans and human hairpin binding proteins for the first nucleotide in the histone mRNA hairpin loop. RNA - a publication of the RNA Society, 6(11), pp. 1539-1550. Cold Spring Harbor Laboratory Press

Martin, F; Michel, F; Zenklusen, D; Müller, B; Schümperli, Daniel (2000). Positive and negative mutant selection in the human histone hairpin-binding protein using the yeast three-hybrid system. Nucleic acids research, 28(7), pp. 1594-1603. Oxford University Press 10.1093/nar/28.7.1594

Dobbelaere, D A; Fernandez, P C; Heussler, Volker (2000). Theileria parva: taking control of host cell proliferation and survival mechanisms. Cellular microbiology, 2(2), pp. 91-99. Blackwell 10.1046/j.1462-5822.2000.00045.x

1999

Dobbelaere, D; Fernandez, P; Machado, J; Botteron, C; Heussler, Volker (1999). Interference by the intracellular parasite Theileria parva with T-cell signal transduction pathways induces transformation and protection against apoptosis. Veterinary immunology and immunopathology, 72(1-2), pp. 95-100. Elsevier 10.1016/S0165-2427(99)00121-X

Suter, Daniel; Tomasini, Reto; Reber, Ueli; Gorman, Linda; Kole, Ryszard; Schümperli, Daniel (1999). Double-target antisense U7 snRNAs promote efficient skipping of an aberrant exon in three human β-thalassemic mutations. Human molecular genetics, 8(13), pp. 2415-2423. Oxford University Press 10.1093/hmg/8.13.2415

Fernandez, P C; Machado, J; Heussler, Volker; Botteron, C; Palmer, G H; Dobbelaere, D A (1999). The inhibition of NF-kappaB activation pathways and the induction of apoptosis by dithiocarbamates in T cells are blocked by the glutathione precursor N-acetyl-L-cysteine. Biological chemistry, 380(12), pp. 1383-1394. De Gruyter 10.1515/BC.1999.178

Johner, A; Stettler, P; Gruber, Andreas; Lanzrein, B (1999). Presence of polydnavirus transcripts in an egg-larval parasitoid and its lepidopterous host. Journal of general virology, 80(7), pp. 1847-1854. Society for General Microbiology 10.1099/0022-1317-80-7-1847

Heussler, Volker; Machado, J; Fernandez, P C; Botteron, C; Chen, C G; Pearse, M J; Dobbelaere, D A (1999). The intracellular parasite Theileria parva protects infected T cells from apoptosis. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 96(13), pp. 7312-7317. National Academy of Sciences NAS 10.1073/pnas.96.13.7312

Heussler, Volker; Fernandez, P C; Machado, J; Botteron, C; Dobbelaere, D A (1999). N-acetylcysteine blocks apoptosis induced by N-alpha-tosyl-L-phenylalanine chloromethyl ketone in transformed T-cells. Cell death and differentiation, 6(4), pp. 342-350. Nature Publishing Group 10.1038/sj.cdd.4400501

Sierakowska, H; Sambade, M J; Schümperli, Daniel; Kole, R (1999). Sensitivity of splice sites to antisense oligonucleotides in vivo. RNA - a publication of the RNA Society, 5(3), pp. 369-377. Cold Spring Harbor Laboratory Press

Dobbelaere, D; Heussler, Volker (1999). Transformation of leukocytes by Theileria parva and T. annulata. Annual review of microbiology, 53, pp. 1-42. Annual Reviews 10.1146/annurev.micro.53.1.1

1998

Weynants, V; Gilson, D; Furger, A; Collins, R A; Mertens, P; De Bolle, X; Heussler, Volker; Roditi, Isabel; Howard, C J; Dobbelaere, A E; Letesson, J J (1998). Production and characterisation of monoclonal antibodies specific for bovine interleukin-4. Veterinary immunology and immunopathology, 66(2), pp. 99-112. Elsevier 10.1016/S0165-2427(98)00184-6

Walther, T N; Wittop Koning, T H; Schümperli, Daniel; Müller, B (1998). A 5'-3' exonuclease activity involved in forming the 3' products of histone pre-mRNA processing in vitro. RNA - a publication of the RNA Society, 4(9), pp. 1034-1046. Cold Spring Harbor Laboratory Press

Heussler, Volker; Kaufmann, H; Glaser, I; Ducommun, D; Müller, C; Dobbelaere, D (1998). A DNA probe for the detection of Dicrocoelium dendriticum in ants of Formica spp. and Lasius spp. Parasitology research, 84(6), pp. 505-508. Springer 10.1007/s004360050437

Gentschev, I; Glaser, I; Goebel, W; McKeever, D J; Musoke, A; Heussler, Volker (1998). Delivery of the p67 sporozoite antigen of Theileria parva by using recombinant Salmonella dublin: secretion of the product enhances specific antibody responses in cattle. Infection and immunity, 66(5), pp. 2060-2064. American Society for Microbiology

Heussler, Volker; Taracha, E L; Musoke, A; Duchateau, L; McKeever, D J (1998). Immunisation with live attenuated Salmonella dublin expressing a sporozoite protein confers partial protection against Theileria parva. Vaccine, 16(8), pp. 834-841. Elsevier 10.1016/S0264-410X(97)00263-6

Gorman, L; Suter, D; Emerick, V; Schümperli, Daniel; Kole, R (1998). Stable alteration of pre-mRNA splicing patterns by modified U7 small nuclear RNAs. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 95(9), pp. 4929-4934. National Academy of Sciences NAS

Grandgirard, Denis; Studer, Erwin; Monney, Laurent; Belser, Tanja; Fellay, Isabelle; Borner, Christoph; Michel, Marcel R. (1998). Alphaviruses induce apoptosis in Bcl-2-overexpressing cells: evidence for a caspase-mediated, proteolytic inactivation of Bcl-2. EMBO journal, 17(5), pp. 1268-1278. Nature Publishing Group 10.1093/emboj/17.5.1268

Furger, A; Schaller, A; Schümperli, Daniel (1998). Functional importance of conserved nucleotides at the histone RNA 3' processing site. RNA - a publication of the RNA Society, 4(3), pp. 246-256. Cold Spring Harbor Laboratory Press

1997

Müller, B; Schümperli, Daniel (1997). The U7 snRNP and the hairpin binding protein: Key players in histone mRNA metabolism. Seminars in cell & developmental biology, 8(6), pp. 567-576. Elsevier 10.1006/scdb.1997.0182

Palmer, G H; Machado, J; Fernandez, P; Heussler, Volker; Perinat, T; Dobbelaere, D A (1997). Parasite-mediated nuclear factor kappaB regulation in lymphoproliferation caused by Theileria parva infection. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 94(23), pp. 12527-12532. National Academy of Sciences NAS

Daubenberger, C; Heussler, Volker; Gobright, E; Wijngaard, P; Clevers, H C; Wells, C; Tsuji, N; Musoke, A; McKeever, D (1997). Molecular characterisation of a cognate 70 kDa heat shock protein of the protozoan Theileria parva. Molecular and biochemical parasitology, 85(2), pp. 265-269. Elsevier 10.1016/S0166-6851(97)02831-4

Wyler-Duda, P; Bernard, V; Stadler, M; Suter, D; Schümperli, Daniel (1997). Histone H4 mRNA from the nematode Ascaris lumbricoides is cis-spliced and polyadenylated. Biochimica et biophysica acta (BBA) - gene structure and expression, 1350(3), pp. 259-261. Elsevier 10.1016/S0167-4781(96)00235-7

Martin, F; Schaller, A; Eglite, S; Schümperli, Daniel; Müller, B (1997). The gene for histone RNA hairpin binding protein is located on human chromosome 4 and encodes a novel type of RNA binding protein. EMBO journal, 16(4), pp. 769-778. Nature Publishing Group 10.1093/emboj/16.4.769

1996

Gruber, Andreas; Stettler, P; Heiniger, P; Schümperli, Daniel; Lanzrein, B (1996). Polydnavirus DNA of the braconid wasp Chelonus inanitus is integrated in the wasp's genome and excised only in later pupal and adult stages of the female. Journal of general virology, 77(11), pp. 2873-2879. Society for General Microbiology 10.1099/0022-1317-77-11-2873

Turner, P C; Whalen, A; Schümperli, Daniel; Matera, A G (1996). The bona fide mouse U7 snRNA gene maps to a different chromosome than two U7 pseudogenes. Genomics, 31(2), pp. 250-252. Elsevier 10.1006/geno.1996.0042

Eschenbacher, K.-H.; Eggli, Peter; Wallach, M.; Braun, R. (1996). Characterization of a 14 kDa oocyst wall protein of Eimeria tenella and E. acervulina. Parasitology, 112(2), pp. 169-176. Cambridge University Press 10.1017/S0031182000084730

1995

Stefanovic, B; Wittop Koning, T H; Schümperli, Daniel (1995). A synthetic histone pre-mRNA-U7 small nuclear RNA chimera undergoing cis cleavage in the cytoplasm of Xenopus oocytes. Nucleic acids research, 23(16), pp. 3152-3160. Information Retrieval Ltd.

Stefanovic, B; Hackl, W; Lührmann, R; Schümperli, Daniel (1995). Assembly, nuclear import and function of U7 snRNPs studied by microinjection of synthetic U7 RNA into Xenopus oocytes. Nucleic acids research, 23(16), pp. 3141-3151. Information Retrieval Ltd.

Estes, D M; Hirano, A; Heussler, Volker; Dobbelaere, D A; Brown, W C (1995). Expression and biological activities of bovine interleukin 4: effects of recombinant bovine interleukin 4 on T cell proliferation and B cell differentiation and proliferation in vitro. Cellular immunology, 163(2), pp. 268-279. Elsevier 10.1006/cimm.1995.1126

Imboden, M.; Müller, N.; Hemphill, A.; Mattioli, R.; Seebeck, T. (1995). Repetitive proteins from the flagellar cytoskeleton of African trypanosomes are diagnostically useful antigens. Parasitology, 110(3), pp. 249-258. Cambridge University Press 10.1017/S0031182000080835

1994

Albrecht, U; Wyler, T; Pfister-Wilhelm, R; Gruber, Andreas; Stettler, P; Heiniger, P; Kurt, E; Schümperli, Daniel; Lanzrein, B (1994). Polydnavirus of the parasitic wasp Chelonus inanitus (Braconidae): characterization, genome organization and time point of replication. Journal of general virology, 75(12), pp. 3353-3363. Society for General Microbiology 10.1099/0022-1317-75-12-3353

Spycher, C; Streit, A; Stefanovic, B; Albrecht, D; Koning, T H; Schümperli, Daniel (1994). 3' end processing of mouse histone pre-mRNA: evidence for additional base-pairing between U7 snRNA and pre-mRNA. Nucleic acids research, 22(20), pp. 4023-4030. Information Retrieval Ltd.

Heussler, Volker; Dobbelaere, D A (1994). Cloning of a protease gene family of Fasciola hepatica by the polymerase chain reaction. Molecular and biochemical parasitology, 64(1), pp. 11-23. Elsevier 10.1016/0166-6851(94)90130-9

Wittop Koning, T H; Schümperli, Daniel (1994). RNAs and ribonucleoproteins in recognition and catalysis. European journal of biochemistry, 219(1-2), pp. 25-42. Blackwell Science 10.1111/j.1432-1033.1994.tb19911.x

Smith, N. C.; Wallach, M.; Petracca, M.; Braun, R.; Eckert, J. (1994). Maternal transfer of antibodies induced by infection with Eimeria maxima partially protects chickens against challenge with Eimeria tenella. Parasitology, 109(5), pp. 551-558. Cambridge University Press 10.1017/S0031182000076423

1993

Eichhorn, M; Prospero, T D; Heussler, Volker; Dobbelaere, D A (1993). Antibodies against major histocompatibility complex class II antigens directly inhibit the growth of T cells infected with Theileria parva without affecting their state of activation. Journal of experimental medicine, 178(3), pp. 769-776. Rockefeller University Press 10.1084/jem.178.3.769

Heussler, Volker; Kaufmann, H; Strahm, D; Liz, J; Dobbelaere, D (1993). DNA probes for the detection of Fasciola hepatica in snails. Molecular and cellular probes, 7(4), pp. 261-267. Elsevier 10.1006/mcpr.1993.1039

Streit, A; Koning, T W; Soldati, D; Melin, L; Schümperli, Daniel (1993). Variable effects of the conserved RNA hairpin element upon 3' end processing of histone pre-mRNA in vitro. Nucleic acids research, 21(7), pp. 1569-1575. Information Retrieval Ltd.

Grimm, C; Stefanovic, B; Schümperli, Daniel (1993). The low abundance of U7 snRNA is partly determined by its Sm binding site. The EMBO Journal, 12(3), pp. 1229-1238. EMBO Press

Mital, R; Albrecht, U; Schümperli, Daniel (1993). Detection of UV-induced RNA:protein crosslinks in snRNPs by oligonucleotides complementary to the snRNA. Nucleic acids research, 21(4), pp. 1049-1050. Information Retrieval Ltd.

Brown, W C; Zhao, S; Woods, V M; Tripp, C A; Tetzlaff, C L; Heussler, Volker; Dobbelaere, D A; Rice-Ficht, A C (1993). Identification of two Th1 cell epitopes on the Babesia bovis-encoded 77-kilodalton merozoite protein (Bb-1) by use of truncated recombinant fusion proteins. Infection and immunity, 61(1), pp. 236-244. American Society for Microbiology

Müller, N.; Imboden, M.; Detmer, E.; Mansfield, J. M.; Seebeck, T. (1993). Cytoskeleton-associated antigens from African trypanosomes are recognized by self-reactive antibodies of uninfected mice. Parasitology, 107(4), pp. 411-417. Cambridge University Press 10.1017/S0031182000067767

1992

Heussler, Volker; Eichhorn, M; Reeves, R; Magnuson, N S; Williams, R O; Dobbelaere, D A (1992). Constitutive IL-2 mRNA expression in lymphocytes, infected with the intracellular parasite Theileria parva. Journal of immunology, 149(2), pp. 562-567. American Association of Immunologists

Heussler, Volker; Eichhorn, M; Dobbelaere, D A (1992). Cloning of a full-length cDNA encoding bovine interleukin 4 by the polymerase chain reaction. Gene, 114(2), pp. 273-278. Elsevier 10.1016/0378-1119(92)90587-F

Melin, L; Soldati, D; Mital, R; Streit, A; Schümperli, Daniel (1992). Biochemical demonstration of complex formation of histone pre-mRNA with U7 small nuclear ribonucleoprotein and hairpin binding factors. The EMBO Journal, 11(2), pp. 691-697. EMBO Press

Müller, N.; Hemphill, A.; Imboden, M.; Duvallet, G.; Dwinger, R. H.; Seebeck, T. (1992). Identification and characterization of two repetitive non-variable antigens from African trypanosomes which are recognized early during infection. Parasitology, 104(1), pp. 111-120. Cambridge University Press 10.1017/S0031182000060856

1991

Harris, M E; Böhni, R; Schneiderman, M H; Ramamurthy, L; Schümperli, Daniel; Marzluff, W F (1991). Regulation of histone mRNA in the unperturbed cell cycle: evidence suggesting control at two posttranscriptional steps. Molecular and cellular biology, 11(5), pp. 2416-2424. American Society for Microbiology

Gruber, Andreas; Soldati, D; Burri, M; Schümperli, Daniel (1991). Isolation of an active gene and of two pseudogenes for mouse U7 small nuclear RNA. Biochimica et biophysica acta (BBA) - gene structure and expression, 1088(1), pp. 151-154. Elsevier 10.1016/0167-4781(91)90167-K

1990

Vogel, Monique; Müller, Norbert; Gottstein, Bruno; Flury, K; Eckert, J; Seebeck, Thomas (1990). Echinococcus multilocularis: characterization of a DNA probe. Acta tropica, 48(2), pp. 109-116. Elsevier 10.1016/0001-706X(90)90050-A

Gruber, Andreas; Streit, A; Reist, M; Benninger, P; Böhni, R; Schümperli, Daniel (1990). Structure of a mouse histone-encoding gene cluster. Gene, 95(2), pp. 303-304. Elsevier

Soldati, D; Schümperli, Daniel (1990). Structures of four human pseudogenes for U7 small nuclear RNA. Gene, 95(2), pp. 305-306. Elsevier

Gottstein, Bruno; Müller, Norbert; Cryz, S J; Vogel, Monique; Tanner, I; Seebeck, Thomas (1990). Humoral and cellular immune response in mice and dogs induced by a recombinant Echinococcus multilocularis antigen produced by a Salmonella typhimurium vaccine strain. Parasite immunology, 12(2), pp. 163-174. Blackwell Scientific Publications 10.1111/j.1365-3024.1990.tb00945.x

Stauber, C; Soldati, D; Lüscher, B; Schümperli, Daniel (1990). Histone-specific RNA 3' processing in nuclear extracts from mammalian cells. In: RNA Processing Part B: Specific Methods. Methods in enzymology: Vol. 181 (pp. 74-89). San Diego, CA: Academic Press

Schümperli, Daniel; Albrecht, U; Koning, T W; Melin, L; Soldati, D; Stauber, C; Lührmann, R (1990). Biochemical studies of U7 snRNPs and of histone RNA 3' processing. Molecular Biology Reports, 14(2-3), pp. 205-206. Kluwer Academic Publishers

1989

Müller, Norbert; Gottstein, Bruno; Vogel, Monique; Flury, Karin; Seebeck, Thomas (1989). Application of a recombinant Echinococcus multilocularis antigen in an enzyme-linked immunosorbent assay for immunodiagnosis of human alveolar echinococcosis. Molecular and biochemical parasitology, 36(2), pp. 151-159. Elsevier 10.1016/0166-6851(89)90187-4

Meier, V S; Böhni, R; Schümperli, Daniel (1989). Nucleotide sequence of two mouse histone H4 genes. Nucleic acids research, 17(2), p. 795. Information Retrieval Ltd.

1988

Stalder, J; Wirthmüller, U; Beck, J; Gruber, Andreas; Meyerhof, W; Knöchel, W; Weber, R (1988). Primary structure and evolutionary relationship between the adult alpha-globin genes and their 5'-flanking regions of Xenopus laevis and Xenopus tropicalis. Journal of molecular evolution, 28(1-2), pp. 64-71. Springer 10.1007/BF02143498

Vogel, Monique; Gottstein, Bruno; Müller, Norbert; Seebeck, Thomas (1988). Production of a recombinant antigen of Echinococcus multilocularis with high immunodiagnostic sensitivity and specificity. Molecular and biochemical parasitology, 31(2), pp. 117-125. Elsevier 10.1016/0166-6851(88)90162-4

1986

Stalder, J; Meyerhof, W; Wirthmüller, U; Gruber, Andreas; Wyler, T; Knöchel, W; Weber, R (1986). Conserved sequences and cell-specific DNase I hypersensitive sites upstream from the co-ordinately expressed alpha I- and alpha II-globin genes of Xenopus laevis. Journal of molecular biology, 188(2), pp. 119-128. Elsevier 10.1016/0022-2836(86)90298-6

1982

Kalogeropoulos, Angelos; Thuriaux, Pierre (1982). Parameters in gene conversion: An algebraic analysis of the hybrid DNA model at the gray locus of Sordaria fimicola. Genetical research, 40(1), pp. 1-18. Cambridge University Press 10.1017/S0016672300018863

1979

Strauss, Andre (1979). Allelism of methionine-sensitive mutants of Schizosaccharomyces pombe to loci involved in adenine biosynthesis. Genetical research, 33(3), pp. 261-268. Cambridge University Press 10.1017/S0016672300018401